PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160270.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 583aa    MW: 63231.8 Da    PI: 4.8917
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.48.8e-1402165801374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAea+++++++la+al++++  la +++ +m+++a+yf+eALa+r++r        l ps+ +++  s+ l+    f+e++P+lkf+h
  XP_019160270.1 216 LVHTLMACAEAIQKDNMKLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LYPSNHNDSAFSDLLQ--MHFYETCPYLKFAH 300
                     689****************************************************........5566666444555544..46************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+++++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p+s++++ l+e+g++La++Ae+++v+fef+ +va++l+dl+
  XP_019160270.1 301 FTANQAILEAFANKNRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGPPSSDNTDHLQEVGWKLAQLAETINVEFEFRGFVANSLADLD 395
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....ee 281
                      ++++++ gE++aVn++++lh+ll++++++e+    vL++v++++P++v+vveqea+hn++ F++rf+e+l+yys+lfdsle  +++e     ++
  XP_019160270.1 396 ASMFNIQDGETVAVNSIFELHQLLARPGAIEK----VLSVVQDMKPEIVTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLEGCAASEGgavcDQ 486
                     ********************************....*********************************************9988777678999* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++++lgr+i+nvvaceg +r+erhetl++Wr r+++aGF++v+l+++a+kqa++ll+ ++ +dgyrvee++g l+lgW++rpL+++SaW+
  XP_019160270.1 487 DKVMSEVYLGRQICNVVACEGVDRVERHETLAQWRTRFKSAGFSAVHLGSNAYKQASMLLALFAgGDGYRVEENDGGLTLGWHTRPLIATSAWK 580
                     *********************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MKRDHFNRSV QGSFSGAGSG GERSGGGSSS GLSKGKKMWE ESEQDAGMDE LLAVLGYKVK  60
ASDMAEVAQK LEQLEEVMGS VQGDDLSSLA SETVHYNPSD LSSWVDSMIS ELNLGDPFLS  120
SQTESSSAIT RNSTQIFDDS SFDSDLTAIP GKAAYPQPPS KRFRTASTTS STSSNMQLGG  180
GNGGVWGSPN GGESISPSES TRSVVLVDSQ ENGVRLVHTL MACAEAIQKD NMKLAEALVK  240
QIGFLAVSQA GAMRKVATYF AEALARRIYR LYPSNHNDSA FSDLLQMHFY ETCPYLKFAH  300
FTANQAILEA FANKNRVHVI DFSMKQGMQW PALLQALALR PGGPPSFRLT GIGPPSSDNT  360
DHLQEVGWKL AQLAETINVE FEFRGFVANS LADLDASMFN IQDGETVAVN SIFELHQLLA  420
RPGAIEKVLS VVQDMKPEIV TVVEQEANHN GPVFMDRFTE SLHYYSTLFD SLEGCAASEG  480
GAVCDQDKVM SEVYLGRQIC NVVACEGVDR VERHETLAQW RTRFKSAGFS AVHLGSNAYK  540
QASMLLALFA GGDGYRVEEN DGGLTLGWHT RPLIATSAWK LTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein