PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158789.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 476aa    MW: 52787.4 Da    PI: 6.6694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.41.9e-1121064751374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  +  +++  l+p +++ +  se+  al+l +e++P ++f+
  XP_019158789.1 106 LVQLLISCAEAVACRDKSRASVLLSELRSSALVFGTSFQRVASCFVQGLADRLALvQPLGTVGYLTPADAAGDAASEKDEALRLVYEICPHIQFG 200
                     689***************************************************95556788888999999999********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     h +aN  I+ea+ege+ +H++D++++    +G QW  L+q Las +++  +lRiT+vg       e+ +++ge L+++A+e g+++ef++ v+++
  XP_019158789.1 201 HYIANASIVEALEGESFIHVVDLGLTlglpHGHQWRHLIQRLASSNRPLRRLRITAVGT----LVERFRSIGEELKDYANEHGINLEFSI-VESN 290
                     **********************98763333788**************************....99************************9.7*** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     le+l+ +++++  gE+laVn+vlqlhr+++es    +   +vL+++ +lsPk++v+veq++ hn++ Fl rf+eal+yysa+fdsl+a lp+ + 
  XP_019158789.1 291 LETLKASDIKIVDGEVLAVNSVLQLHRVVKESRGALN---SVLQIIHELSPKILVLVEQDSGHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT 382
                     *****************************88877777...8****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l+k++  +gy+v ee+g+lvlgW+++p+v++S+W+
  XP_019158789.1 383 RRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVAQAKQWLAKTSpCEGYTVTEEKGCLVLGWHSKPIVAASCWK 475
                     ************************************************96..6889***9999999****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MSPGFISDEL AYSSNPYATI LKRNADSCIP VFCDEMLESK RPKRAPSIAD CLGSNEIRNS  60
LSRVHFRDHV LAYSQRFLAA EAVELQAADE MIGGSDNGES SDGMKLVQLL ISCAEAVACR  120
DKSRASVLLS ELRSSALVFG TSFQRVASCF VQGLADRLAL VQPLGTVGYL TPADAAGDAA  180
SEKDEALRLV YEICPHIQFG HYIANASIVE ALEGESFIHV VDLGLTLGLP HGHQWRHLIQ  240
RLASSNRPLR RLRITAVGTL VERFRSIGEE LKDYANEHGI NLEFSIVESN LETLKASDIK  300
IVDGEVLAVN SVLQLHRVVK ESRGALNSVL QIIHELSPKI LVLVEQDSGH NGPFFLGRFM  360
EALHYYSAIF DSLDAMLPKY DTRRAKIEQF YFAEEIKNIV SCEGPARVER HERVDQWRRR  420
MSRAGFQAAP IKMVAQAKQW LAKTSPCEGY TVTEEKGCLV LGWHSKPIVA ASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-75GRAS family protein