PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158657.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 522aa MW: 60017.8 Da PI: 9.3771

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.6e-08	316	356	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE l ++ +k++G++ Wk+ a+++g R + ++k+ w+ XP_019158657.1 316 QWTEEEKALVLRHHKLHGND-WKSLAEELG--RHRFHVKDTWRR 356 7*****************.******8..999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MVMGAEDEVV ARKSKKRKER NNDKLAANPV HIVKDVGVEG DKSVEEENLM RKKSDNEGVE 60 RTKKKKKSAG DSKGGALMED TNGITVEKAK KRKRKREVES DNNELHAVSQ DTANDVSVDD 120 GGYVNSTATE ICKSKKKHEK KAGKISDGCT EGKVEKVKRK KKKNKKKKGE DDQDFSVNET 180 QASGVGNDSI SQNEVKGSSK DPKLKNSKKK VRFSNELEVF PESNVPESEN DQNEEVELIR 240 GKRFSKIEDE KIKEAVYKYI AVRNLGEEGL EMVLNSRSHP EVRNCWKEIG AALPNRPYVA 300 VYYRAQILFR RSETRQWTEE EKALVLRHHK LHGNDWKSLA EELGRHRFHV KDTWRRIKLP 360 NVKRGHWSQD EYQSLFDLVN TDLQVRIFED KKSKHGMLRD NICWTAISDK LSTRNGPNCC 420 LKWYNKLTSP MVAEGIWSDS DDYRLIGALY NLDETCIENV DWDNLVEHRS GEICLKRWRQ 480 MVLHIGNHGN KPFSEQVEVL AKRYCPSLIE VRETWDSKPL VP

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MVMGAEDEVV ARKSKKRKER NNDKLAANPV HIVKDVGVEG DKSVEEENLM RKKSDNEGVE  60
RTKKKKKSAG DSKGGALMED TNGITVEKAK KRKRKREVES DNNELHAVSQ DTANDVSVDD  120
GGYVNSTATE ICKSKKKHEK KAGKISDGCT EGKVEKVKRK KKKNKKKKGE DDQDFSVNET  180
QASGVGNDSI SQNEVKGSSK DPKLKNSKKK VRFSNELEVF PESNVPESEN DQNEEVELIR  240
GKRFSKIEDE KIKEAVYKYI AVRNLGEEGL EMVLNSRSHP EVRNCWKEIG AALPNRPYVA  300
VYYRAQILFR RSETRQWTEE EKALVLRHHK LHGNDWKSLA EELGRHRFHV KDTWRRIKLP  360
NVKRGHWSQD EYQSLFDLVN TDLQVRIFED KKSKHGMLRD NICWTAISDK LSTRNGPNCC  420
LKWYNKLTSP MVAEGIWSDS DDYRLIGALY NLDETCIENV DWDNLVEHRS GEICLKRWRQ  480
MVLHIGNHGN KPFSEQVEVL AKRYCPSLIE VRETWDSKPL VP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	19	RKSKKRKE
2	51	67	RKKSDNEGVERTKKKKK
3	60	66	ERTKKKK
4	63	93	KKKKKSAGDSKGGALMEDTNGITVEKAKKRK
5	64	94	KKKKKSAGDSKGGALMEDTNGITVEKAKKRK
6	90	95	KKRKRK
7	90	96	KKRKRKR
8	158	166	KRKKKKNKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-121	MYB_related family protein