PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158472.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 507aa MW: 56924.8 Da PI: 5.7138

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41	3.5e-13	171	242	15	94
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 lpk+f+++h + ++ ++l de+gr+ e k+ ++k++ l++GW++F +++L gD+vvF+l++ + ++ XP_019158472.1 171 TRGLPKDFCTSHLPN--HDTAIILVDENGRETESKYLIEKHG----LSGGWRGFPLQHNLVPGDVVVFQLIQPLKL--KL 242 3469******533..5568***********777777....*********************9986333..33 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MGMRASFKKM NLLAANKKVI KRRSPTPKKV RSIVEMVSSS TKFEVSKFGG IGNFELWRSR 60 VKNLLAYQDI LKTLRAVKPA NLEEADWKEL KKQETMNVVQ ADDSYYSEGD VLQLPAYMAL 120 FEQAKGEGSR REYGCVDENS TAMRRARELQ ANLSPQFPSV VVKFLLHSHT TRGLPKDFCT 180 SHLPNHDTAI ILVDENGRET ESKYLIEKHG LSGGWRGFPL QHNLVPGDVV VFQLIQPLKL 240 KLYVVRINDS ANIAGAISLL DLSHYAQPIA TEGLLLEGYD VEENVLRIED AADQLTRIQH 300 ESDNLEREVS TSDNLLSGSD RDNNPLQPMN VVEFSQVKNF EDFNVVVNNL NIDSEISEDT 360 RLKYYELCRS RNAYLHELEE PGLNYTLIAG AITETVKIAD GIKAATLATG RDVLEVWDRT 420 LIGVGHFSME VGFLRGRINE LIRLCEGAEI VAGKEKEKAI AEAKMKDLLY KVSKVSGVIK 480 ILEEEIQAHS GGERVEEVFK NVASADW

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MGMRASFKKM NLLAANKKVI KRRSPTPKKV RSIVEMVSSS TKFEVSKFGG IGNFELWRSR  60
VKNLLAYQDI LKTLRAVKPA NLEEADWKEL KKQETMNVVQ ADDSYYSEGD VLQLPAYMAL  120
FEQAKGEGSR REYGCVDENS TAMRRARELQ ANLSPQFPSV VVKFLLHSHT TRGLPKDFCT  180
SHLPNHDTAI ILVDENGRET ESKYLIEKHG LSGGWRGFPL QHNLVPGDVV VFQLIQPLKL  240
KLYVVRINDS ANIAGAISLL DLSHYAQPIA TEGLLLEGYD VEENVLRIED AADQLTRIQH  300
ESDNLEREVS TSDNLLSGSD RDNNPLQPMN VVEFSQVKNF EDFNVVVNNL NIDSEISEDT  360
RLKYYELCRS RNAYLHELEE PGLNYTLIAG AITETVKIAD GIKAATLATG RDVLEVWDRT  420
LIGVGHFSME VGFLRGRINE LIRLCEGAEI VAGKEKEKAI AEAKMKDLLY KVSKVSGVIK  480
ILEEEIQAHS GGERVEEVFK NVASADW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-31	B3 family protein