PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019157885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28155 Da PI: 8.1264 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++++++G g+W++ ++ g+ R++k+c++rw +yl XP_019157885.1 14 KGAWTKEEDQLLINYIRLHGEGCWRSLPKPAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w++ XP_019157885.1 67 RGNFTQQEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MGRSPCCEKA HTNKGAWTKE EDQLLINYIR LHGEGCWRSL PKPAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQQEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT QIKRKLISCG 120 IDPQTHRPLD ASAAAASCGG ATKPENISLD LSSSTPSQEE TKCSSGTTSE ESHHQPLKDK 180 QRNDEQMAGL DLSIGLALHP KTEDSADSTA SGGLLLVAPP PPAAVELSVT EAVCLCWQLG 240 SRSGGLCNKC HATKCFLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-89 | MYB family protein |