PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157044.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 326aa    MW: 35841.9 Da    PI: 7.9654
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.4e-32591872105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................ss 67 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak +i+el+ +                               
  XP_019157044.1  59 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKNEIDELPPLqlpptgnfnpnlqqwlcsaaaaataaaesH- 152
                     689*************************************************************555555444444444433222222211110. PP

             TCP  68 ssaseceaesssssasnsssg.................kaaksaakskksqksaa 105
                                         g                 + a++++  +++q++++
  XP_019157044.1 153 --------------------GvkegvplepptnhksskEIAEADNDDSQDQHNPN 187
                     ....................12223333333322111111111112222222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MITTEVDFSA TTKPEEGNTS SDHRNVNLNK VSAAIAATPT SSAWTRLKDP RIVRVSRAFG  60
GKDRHSKVCT VRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN VAKNEIDELP  120
PLQLPPTGNF NPNLQQWLCS AAAAATAAAE SHGVKEGVPL EPPTNHKSSK EIAEADNDDS  180
QDQHNPNKIN LLPRSHNSSS SSSLPNLMMG NAAQFNSFLR WDRHHHHHGG VSEDFHNFNV  240
LPLSSPSGLP HSFFHHPQTI IGGGEFEPSS RQIINFQMLS SGGSQHPSPA LLRPPPIHDF  300
TTHSLRPLRF LAPHNHTGSN PSKDPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.13e-44TCP family protein