PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156799.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 242aa    MW: 25586.7 Da    PI: 8.8766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001396118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F +   L  H  +H
  XP_019156799.1  96 YKCSVCDKAFGSYQALGGHKASH 118
                     9*********9999998888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MALEALNSPT TPRASVFQFE DPASLSYLDQ QWAKGKRSKR PRSVERQPTE EEYLALCLIM  60
LARSGGGSSA KAVEAPAAAP RPPPPPQVSE QNKLLYKCSV CDKAFGSYQA LGGHKASHRK  120
LGGGDDHPTT STATNSSAGA GAGRTHECSI CHKCFPTGQA LGGHKRCHYE GTIGNGGGNS  180
AAAGTSSSGT GSSNSLRNFD LNLPALPELS PVFLRRFADD EVESPHPAKK SRLQIPTKLE  240
LF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-56C2H2 family protein