PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156219.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 331aa MW: 35723.2 Da PI: 6.6241

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4e-14	104	155	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ XP_019156219.1 104 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 155 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MALEALSTTP CNNNDPFNFI FYDATLSGAA AGGNNALFSE NVCPETQDLT TGGVGSGGLN 60 SGRSSNLVGA AEGSEGAVRE GGGGRKKRRR RPKVCKNKEE AETQRMTHIA VERNRRKQMN 120 EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQS LEAEKLRLQR QQQQSAAGDD 180 GATAATKTDD GAVASVSGGV KGRSFTNPFW QFFAYPQYTT SCSSSMIPNK CTSKTTAATA 240 DIEVTLIETH ANVRILSSTR KTRQLSKMVA AFQTMCMSVL HLNVTTFDLL VLYSISAKVE 300 GGCQLSSADE IAEAVHHILR VIEEEEEVTI P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	91	RKKRRRR
2	86	91	KKRRRR
3	105	116	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-67	bHLH family protein