PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155989.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25477.3 Da    PI: 8.7348
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.9e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKA+ELSvLCda++a+i+fs tgkl++++s
  XP_019155989.1  9 KKIDNITARQVTFSKRRRGLFKKAQELSVLCDAQIALIVFSATGKLFDFAS 59
                    68**********************************************986 PP
2K-box54.93.7e-19901721799
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +  + +L kei    +e R l+Ge+L+ Ls++eLqqLe++Le +l+++ ++K e ++++i +lq+k  el eenk+Lr+k++
  XP_019155989.1  90 ENSVHVRLSKEIADKTHEFRMLKGEELQGLSIEELQQLEKRLEVGLSRVVKTKGERIMNEIATLQRKGAELLEENKQLRQKVA 172
                     455567899999999999***************************************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAQELSVLCD AQIALIVFSA TGKLFDFASS  60
SMKDILGKYK LHSSDNEKTN LQPSLQLQLE NSVHVRLSKE IADKTHEFRM LKGEELQGLS  120
IEELQQLEKR LEVGLSRVVK TKGERIMNEI ATLQRKGAEL LEENKQLRQK VAMIGGGKFP  180
ATADVECTVA EEGISSESIT TTNVCSCSSA PPAEDYCSDT SLKLGLPFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-90MIKC_MADS family protein