PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155980.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 581aa MW: 61607.9 Da PI: 8.2284

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.5e-08	204	251	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 r+ W++ Ed l+ avk+ G g+W++I++ Rt+ q+ rw + XP_019155980.1 204 RKFWSETEDMELIAAVKKRGEGNWASISKGEFkGDRTASQLSKRWAVL 251 678***********************9655579****9999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MSEKSKDHKK CYVSDEQISS LLQRYTLKTV LALLEEVDQA KEVKYDWNAL VKKTKTGITN 60 AREYQMLWRH LAYGHAFVDG LVDEAQPLDD ASDLECELEA YPAVNSEASA EASAFVKVLV 120 GSGTANDSHT SNGMTVEAPL TISIPNGQRS INSSGTSDQS ISMQESKVII PVFVSKKPLA 180 NAISTKGLDT NGPSDANLPP PRKRKFWSET EDMELIAAVK KRGEGNWASI SKGEFKGDRT 240 ASQLSKRWAV LRKQQGALVG NNSELSEMHL AHRAMSLALD VPMGDNSKAA SSIRSEGTNA 300 NAASGNPAKH LAYDTSSVNT KSQHQGQQDF ASNAAPKLAT LGPSKLLVSE KPSTKPNIST 360 NLMVKAAAVA AGARIASPSD AASLFRAAQS TNAVHISTGG GPLIKSSFSG NTNALSSNVH 420 LIRTSLPSNS TSLLSGSRTE PRPVQCQSVN PASPVVQSNV VGMASGLNAS TKVVSNGTHS 480 NPVAEFGIKN VKEKAVSSLE IVTEKVVPQQ NQATCPHIAS EGDQISASTR NALVENAQGD 540 QIAVPGNSSR EKIGMTCVSD DPVKENGQRN HKASFEVLLQ D

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MSEKSKDHKK CYVSDEQISS LLQRYTLKTV LALLEEVDQA KEVKYDWNAL VKKTKTGITN  60
AREYQMLWRH LAYGHAFVDG LVDEAQPLDD ASDLECELEA YPAVNSEASA EASAFVKVLV  120
GSGTANDSHT SNGMTVEAPL TISIPNGQRS INSSGTSDQS ISMQESKVII PVFVSKKPLA  180
NAISTKGLDT NGPSDANLPP PRKRKFWSET EDMELIAAVK KRGEGNWASI SKGEFKGDRT  240
ASQLSKRWAV LRKQQGALVG NNSELSEMHL AHRAMSLALD VPMGDNSKAA SSIRSEGTNA  300
NAASGNPAKH LAYDTSSVNT KSQHQGQQDF ASNAAPKLAT LGPSKLLVSE KPSTKPNIST  360
NLMVKAAAVA AGARIASPSD AASLFRAAQS TNAVHISTGG GPLIKSSFSG NTNALSSNVH  420
LIRTSLPSNS TSLLSGSRTE PRPVQCQSVN PASPVVQSNV VGMASGLNAS TKVVSNGTHS  480
NPVAEFGIKN VKEKAVSSLE IVTEKVVPQQ NQATCPHIAS EGDQISASTR NALVENAQGD  540
QIAVPGNSSR EKIGMTCVSD DPVKENGQRN HKASFEVLLQ D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	7e-70	MYB_related family protein