PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019155909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22111.9 Da PI: 8.0399 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.1 | 6.4e-15 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie r tfskRr+g KKA EL+ L + ++ +++ s+tgkl+ y XP_019155909.1 17 RIEKAGDRFATFSKRRKGFYKKATELCWLSGCDIGIVLTSPTGKLFSY 64 8999999**************************************999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MEEGKKTRGR QRIPMQRIEK AGDRFATFSK RRKGFYKKAT ELCWLSGCDI GIVLTSPTGK 60 LFSYFNPSPE SIARRLFNRT ENAGGEISLA VDGHSRRQVN ELYEMMDGVE ARMEGLNQRS 120 KVLDQSIPSN TWWDTPVDEF SLEDVERCQA FLAEMQTQVS ARFDALNNGG AGSSSSIAAQ 180 QQNPALFTPL LPSNAPIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-22 | M-type_MADS family protein |