PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019155582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YC | ||||||||
Protein Properties | Length: 278aa MW: 30944.1 Da PI: 4.708 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.9 | 2.7e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++ded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl d+v r XP_019155582.1 6 DTRFPAARIKKIMQTDEDIGKIANAVPLLVSKALELFLQDLCDRTYDITLKRGAKTLNSYHLKQCVQTCNVFDFLKDVVSR 86 5789**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence |
MKKKLDTRFP AARIKKIMQT DEDIGKIANA VPLLVSKALE LFLQDLCDRT YDITLKRGAK 60 TLNSYHLKQC VQTCNVFDFL KDVVSRVPDL GVSDGDDRSA AKRRKIAEAD DHYSDDDIKR 120 SDMHETTPSS SSGRGRGRGR GRGRGRGRAV DREQTTLYEK FEDAADQRDE KQKKRNSERL 180 DSGSETADSK ISLAGQSLEA TVRNFDLNVD LNDETGDSSA VPAEAPSPSP TVPSVETKHE 240 EEYPGWSDVE GMAIDPIQLA NLNRTTTDEV EEDYDEEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 143 | RGRGRGRGRG |
2 | 134 | 144 | RGRGRGRGRGR |
3 | 136 | 145 | RGRGRGRGRG |
4 | 136 | 146 | RGRGRGRGRGR |
5 | 138 | 147 | RGRGRGRGRG |
6 | 138 | 148 | RGRGRGRGRGR |
7 | 140 | 149 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 1e-61 | NF-YC family protein |