PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154918.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24874.5 Da    PI: 9.8805
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.67e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstgklye++s
  XP_019154918.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59
                    8***********************************************86 PP
2K-box85.21.4e-2876169497
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     s++ + ++++ + +q+e+++L+ke+++Lq+++R+l+Ge+L  Ls+k+Lq+Le++L+ slk iR+kK+++l+++i+el +k   +q+en +L kk
  XP_019154918.1  76 SQQLQDSASELKFWQREATNLRKELHSLQQNHRQLMGEELYGLSVKDLQNLENKLDMSLKGIRAKKEQILINEIQELTRKGTIIQQENLELYKK 169
                     33333688899*******************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MGRGKIPIRR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSS TGKLYEFAST  60
SMKAIMEGYN KTKEQSQQLQ DSASELKFWQ REATNLRKEL HSLQQNHRQL MGEELYGLSV  120
KDLQNLENKL DMSLKGIRAK KEQILINEIQ ELTRKGTIIQ QENLELYKKA YGKRDPDGAV  180
TKNTTDFTLC RDSLSPMHLQ LSCQPQNFDV MSRASDSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-85MIKC_MADS family protein