PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154802.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 475aa    MW: 53648.5 Da    PI: 7.8882
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154802.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2974.8e-91934731374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A+av+++    a + L++l  +as +gd++qR+aayf+ AL arl+   s  y+ +   +t+     e+l+a++ ++ +sP+++f+h
  XP_019154802.1  93 LIHLLLVSATAVDENTPGPAAESLSELYRRASLSGDAVQRVAAYFADALVARLLTRKSPFYHMIMKPPTP----HEHLFAFTHLYRASPFHQFAH 183
                     689****************************************************999999988777775....799****************** PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvak 184
                     +taNqaI ea+++e      ++H+iDfd+s+G+QWp+L+q+L+s p  + sl+iT++g+       el+et+ rL +fA+ + +++f+f+ ++ +
  XP_019154802.1 184 FTANQAIIEAFHQEshtnnATLHVIDFDVSHGFQWPSLIQSLSSPP-TKISLKITAFGP----TLSELRETEARLVSFAKGFrNLSFSFTGMLLN 273
                     ************9977776788**********************55.458*********....99***************9758*********** PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpre 278
                     +++  +l ++   p+E++aVnlv+ l rl+        + ++ L++v  lsP vv+vveqe    +  +Fl rf+e+l+y++a+fdsl+  lp +
  XP_019154802.1 274 SIDYYTLAKITKTPHETVAVNLVFYLNRLP--------KFSDALRAVHLLSPSVVTVVEQEGFFrSPRNFLSRFMESLHYFAAMFDSLDDCLPID 360
                     *****************************9........35569******************8886889*************************** PP

            GRAS 279 seerikvErellgreivnvvac.....egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg..........yrveee.sgs 357
                     s+er ++E+ +lg+ei+ v ++     eg+  + r e++e+W+ r+e+ GF  v+ls ++++qaklll+  +s g          +rv e+ +g 
  XP_019154802.1 361 SQERLSIEKNYLGNEIKRVMTNnggcgEGDLIVPRYEKMETWKGRMESEGFCGVRLSCQNVMQAKLLLKIASSGGhccrvrfdggFRVFERdDGM 455
                     ********************98222224455788**********************************987765544222222235555553555 PP

            GRAS 358 lv.lgWkdrpLvsvSaWr 374
                     ++ l W+d+pL+++S+Wr
  XP_019154802.1 456 AIsLAWQDKPLTTASVWR 473
                     559**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MIWNMEGSVD EELLSLRLGI ATGSNKKKIM MKRKRKRRDD NFINNTLVLS DDESYEGQIF  60
SLLQTREQML KVEKRAAKAV ADEEEDKGGG LHLIHLLLVS ATAVDENTPG PAAESLSELY  120
RRASLSGDAV QRVAAYFADA LVARLLTRKS PFYHMIMKPP TPHEHLFAFT HLYRASPFHQ  180
FAHFTANQAI IEAFHQESHT NNATLHVIDF DVSHGFQWPS LIQSLSSPPT KISLKITAFG  240
PTLSELRETE ARLVSFAKGF RNLSFSFTGM LLNSIDYYTL AKITKTPHET VAVNLVFYLN  300
RLPKFSDALR AVHLLSPSVV TVVEQEGFFR SPRNFLSRFM ESLHYFAAMF DSLDDCLPID  360
SQERLSIEKN YLGNEIKRVM TNNGGCGEGD LIVPRYEKME TWKGRMESEG FCGVRLSCQN  420
VMQAKLLLKI ASSGGHCCRV RFDGGFRVFE RDDGMAISLA WQDKPLTTAS VWRCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12637KKKIMMKRKRKR
22738KKKIMMKRKRKR
33238KRKRKRR
43338RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-51GRAS family protein