PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154778.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 264aa    MW: 29730.7 Da    PI: 7.8905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-1184136155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r++ h e+ErrRR+++ + ++ Lr  lP        +K s ++ +++Av+YI + q
  XP_019154778.1  84 RKADHREIERRRRQEMATLYASLRNELPLeY---LRGKRSISDHVREAVRYIEQKQ 136
                     6889*************************77...9*****************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MDNIFPSSSF TLQLNDDDYF EPFDPSFVFQ QQHSLPPLLN PDVPLAAEAE AGRRRKGKKQ  60
LPESPAAGNG GVGGDSNAKG DKQRKADHRE IERRRRQEMA TLYASLRNEL PLEYLRGKRS  120
ISDHVREAVR YIEQKQKSIR ELEAKRDKLK RDVISDPNKV RIISTRSEDT SPSIMVKIQS  180
SREGVVEILI NCGPSKLGFG VSCVLELLHE EGLDAVSCFC CRVEGNLLYS IQAEGSQETS  240
VDLQMLRQKV THRITINITN NLIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260GRRRKGKKQ
28496RKADHREIERRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-36bHLH family protein