PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154669.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 509aa MW: 52516.2 Da PI: 8.3486

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019154669.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.5	0.0001	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + XP_019154669.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MPVDADNSSA VNDSTGSGEA SVSSSGNQAA PPKATSKKRR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKKVYVCP EPTCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTKEYK CDCGTLFSRK 180 DSFITHRAFC DALAVESAKA QTDMAAPTAD EEPVPPSSSP PPPPPAIAPP PPPPVTPQST 240 PAIPSVLAVQ NPGLPENPST NPAGSTPKQV VEETTVIASL TGSCSCSSSS SSNGSSSSSV 300 FACLFGSATP SGTSRSQASG FADMFQSMGA PEKTLEIAPQ PSSKETVSLC LAMNHGSSIF 360 GPGSQDRRQF GPAPQPPAMS ATALLQKAAQ MGAAATNSSF LRGLGIVSSS SPSRQIETDG 420 ASLATAGLGL GLPCDGGSGL KELMLGTPSV FDPKHPTLDL LGLGMAAGGG PSPGLSALMT 480 SMGGNIDVAA AAGSFGSTDF SGKDIGRSS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MPVDADNSSA VNDSTGSGEA SVSSSGNQAA PPKATSKKRR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKKVYVCP EPTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTKEYK CDCGTLFSRK  180
DSFITHRAFC DALAVESAKA QTDMAAPTAD EEPVPPSSSP PPPPPAIAPP PPPPVTPQST  240
PAIPSVLAVQ NPGLPENPST NPAGSTPKQV VEETTVIASL TGSCSCSSSS SSNGSSSSSV  300
FACLFGSATP SGTSRSQASG FADMFQSMGA PEKTLEIAPQ PSSKETVSLC LAMNHGSSIF  360
GPGSQDRRQF GPAPQPPAMS ATALLQKAAQ MGAAATNSSF LRGLGIVSSS SPSRQIETDG  420
ASLATAGLGL GLPCDGGSGL KELMLGTPSV FDPKHPTLDL LGLGMAAGGG PSPGLSALMT  480
SMGGNIDVAA AAGSFGSTDF SGKDIGRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-141	C2H2 family protein