PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153080.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 406aa MW: 45094.3 Da PI: 5.3599

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.8	2.8e-12	22	119	14	128
NAM 14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 +v +L k + g++++ +v++ v+ y+ +P++Lp + wy ++ k + + g+W +g e+++ + +g ++ L f XP_019153080.1 22 IV-LHLDKFMCGSRVPD-TVLDCVNPYQNQPQRLP------PDIWYLVNSTGPK--------ETEDGGFWAVKGDACEIFE-NPDIKGWRTNLEF 99 55.67888888888777.67888888888888888......2346655554443........34569************.9999***** PP NAM 109 ykgrapkgektdWvmheyrl 128 +kgrap g kt+Wvm+ey++ XP_019153080.1 100 FKGRAPYGLKTEWVMQEYSI 119 ****************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MCPAPSPTPL RALGPGCSEK DIVLHLDKFM CGSRVPDTVL DCVNPYQNQP QRLPPDIWYL 60 VNSTGPKETE DGGFWAVKGD ACEIFENPDI KGWRTNLEFF KGRAPYGLKT EWVMQEYSIT 120 RKGAHKDTQK SRVLCRIIKA SGSFSNLVLS VVPNTTSTSG RGSSTESQTK SNTVSTRLPE 180 VHRTESLFVE SKSDYVSSDD FMELNDLEGD IGQSPETCRV EHPSDQDVLY DGFLELADLD 240 KDISKSPVVE KPENPLDVDL ADTILRGDYL ELNDLAELAS HSSSSANSSH RKSDEFFGLL 300 LDDEKSQDLQ AKGSGFHCNY MGSGRPNEVI LPPTTSELMI TGTGTNEPQV QTRPTSSTKS 360 KSSDKALKDP NVKRPKPESR NEDSSNASSS RHRKKKFKKY FCFFPF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MCPAPSPTPL RALGPGCSEK DIVLHLDKFM CGSRVPDTVL DCVNPYQNQP QRLPPDIWYL  60
VNSTGPKETE DGGFWAVKGD ACEIFENPDI KGWRTNLEFF KGRAPYGLKT EWVMQEYSIT  120
RKGAHKDTQK SRVLCRIIKA SGSFSNLVLS VVPNTTSTSG RGSSTESQTK SNTVSTRLPE  180
VHRTESLFVE SKSDYVSSDD FMELNDLEGD IGQSPETCRV EHPSDQDVLY DGFLELADLD  240
KDISKSPVVE KPENPLDVDL ADTILRGDYL ELNDLAELAS HSSSSANSSH RKSDEFFGLL  300
LDDEKSQDLQ AKGSGFHCNY MGSGRPNEVI LPPTTSELMI TGTGTNEPQV QTRPTSSTKS  360
KSSDKALKDP NVKRPKPESR NEDSSNASSS RHRKKKFKKY FCFFPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	2e-12	NAC family protein