PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019152990.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 238aa    MW: 24843.8 Da    PI: 8.6841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019152990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066142164123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k+F++   L  H r+H
  XP_019152990.1 142 HECSICHKCFPTGQALGGHKRRH 164
                     78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MATLEALNSP TAASAPAIQY LDQSWVKGKR TKRARGVEYQ PTEEEYLALC LIMLARGGAG  60
GGAPVEERLP TAAAAGQVSE QKLLYKCSVC DKAFGSFQAL GGHKASHRKH AAPGGGGGDD  120
RSTTSTTTGN SSANGGGSGR VHECSICHKC FPTGQALGGH KRRHYEGGNV RIAAARSNSV  180
GVASSDCVGS TNSSHRDFDL NLPALPEFSP GFAEDEVESP HPAKKARLSI PTTKLHLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-54C2H2 family protein