PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152908.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 417aa MW: 48058.8 Da PI: 6.3495

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.1	6.3e-25	105	200	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+q+v++Li+a+++++e+ +++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d + XP_019152908.1 105 KWTDQMVRLLITAVSYIGEEASAEHggrrkcaniHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLDMM 199 7************99888887544556668889*****************************************669******9999 PP trihelix 86 e 86 e XP_019152908.1 200 E 200 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MEGNISSGNM IPGSSYGGLD LQGSMRVHHH QQHPVGLHPH PRQGSMVHSQ IPEGFPLSIG 60 SQNISLSDYG KGEGGKSVSD DEEPSFTEDN DPNRGKKTPM WHRVKWTDQM VRLLITAVSY 120 IGEEASAEHG GRRKCANIHK KGKWKSVSKV MAERGHFVSP QQCEDKFNDL NKRYKRLNEI 180 LGRGTSCEVV ENPSLLDMME HIPEKAKEEV KKILSSKHLH YEEMCSYHNG NRLHLPPDPD 240 LQRSLRLALR TRDDTDDNDT VRRPPHDDND DDDLDAELDE HDEYEENHNF PYGIQTGPAK 300 KPKPNACFGS LDCNKSLSFR PQNANAEANL MSPDELKDSN LQKRWMDQRS LQLEEQKLHI 360 QAQMLELEKE RFKWQRFSQK KNFELEMMRM ENERMKLENE RMALELKQKE MLADNNS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MEGNISSGNM IPGSSYGGLD LQGSMRVHHH QQHPVGLHPH PRQGSMVHSQ IPEGFPLSIG  60
SQNISLSDYG KGEGGKSVSD DEEPSFTEDN DPNRGKKTPM WHRVKWTDQM VRLLITAVSY  120
IGEEASAEHG GRRKCANIHK KGKWKSVSKV MAERGHFVSP QQCEDKFNDL NKRYKRLNEI  180
LGRGTSCEVV ENPSLLDMME HIPEKAKEEV KKILSSKHLH YEEMCSYHNG NRLHLPPDPD  240
LQRSLRLALR TRDDTDDNDT VRRPPHDDND DDDLDAELDE HDEYEENHNF PYGIQTGPAK  300
KPKPNACFGS LDCNKSLSFR PQNANAEANL MSPDELKDSN LQKRWMDQRS LQLEEQKLHI  360
QAQMLELEKE RFKWQRFSQK KNFELEMMRM ENERMKLENE RMALELKQKE MLADNNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-113	Trihelix family protein