PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152839.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 342aa MW: 38406.8 Da PI: 8.9456

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.4	2.3e-17	17	99	10	98
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++l +p kf++++ +k + + l +sg W+v l + +++ ++ GWkeFv+++ L+ +D+++F+++g s+f +vk+f+ XP_019152839.1 17 ESFNQLLAVPQKFVNKMREK--LESSVALIGPSGAIWNVGL--TALGEELYFDHGWKEFVEEHSLQKNDMLLFEYNGGSQF--KVKIFD 99 4556789*****888655..4447***********..99999**************************99999..999997 PP
2	B3	39	1.5e-12	223	322	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS... CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr... 87 f ++ p +v ++ + +p + a+++ ++k ++++l+ + +g++W+v++ y + ++++++ +kG ++Fv +n+++e D++vF++ +r XP_019152839.1 223 FTVIMAPGNVYRRFEMAIPGDWAKTNlpEIK--RNFDLR-LSFKGKTWTVRC-YqrlKFGRRTILAGKGYRSFVLENQIEEFDVCVFEMASRdtg 313 6677888899999***********74433..778899.568*****.43546666669999*******************7755212 PP SEE..EEEE CS B3 88 sefelvvkv 96 ++ +++v++ XP_019152839.1 314 EDISFNVSI 322 334455555 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MYWSCFKTIC FVQILSESFN QLLAVPQKFV NKMREKLESS VALIGPSGAI WNVGLTALGE 60 ELYFDHGWKE FVEEHSLQKN DMLLFEYNGG SQFKVKIFDL QSQCEKESSY FIRKCGRGDG 120 VYKIESNPAL ALALTSAPAP TPTSDDETSS ESSVQFLGST KWAPPLDKIT QKQASPPPMR 180 KTSEGSKDTT SRSQLKSNRR AVTEEEKGKA KQMASAAVSP TGFTVIMAPG NVYRRFEMAI 240 PGDWAKTNLP EIKRNFDLRL SFKGKTWTVR CYQRLKFGRR TILAGKGYRS FVLENQIEEF 300 DVCVFEMASR DTGEDISFNV SIFRVVEDAV PPSRVNPVSS SK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MYWSCFKTIC FVQILSESFN QLLAVPQKFV NKMREKLESS VALIGPSGAI WNVGLTALGE  60
ELYFDHGWKE FVEEHSLQKN DMLLFEYNGG SQFKVKIFDL QSQCEKESSY FIRKCGRGDG  120
VYKIESNPAL ALALTSAPAP TPTSDDETSS ESSVQFLGST KWAPPLDKIT QKQASPPPMR  180
KTSEGSKDTT SRSQLKSNRR AVTEEEKGKA KQMASAAVSP TGFTVIMAPG NVYRRFEMAI  240
PGDWAKTNLP EIKRNFDLRL SFKGKTWTVR CYQRLKFGRR TILAGKGYRS FVLENQIEEF  300
DVCVFEMASR DTGEDISFNV SIFRVVEDAV PPSRVNPVSS SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-41	B3 family protein