PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152838.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 348aa MW: 39629.2 Da PI: 9.5451

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.6e-17	34	113	13	98
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +l +p kf+++ +k + l+ +sg W+v l + ++++ ++++GWkeFv+++ L+e+D ++Fk++g s+f v +f+ XP_019152838.1 34 NEQLAVPQKFVNNLREK--LAGCVALKGPSGAIWNVGL--TACGEKLYFQRGWKEFVEEHSLQENDLLIFKYNGGSQF--DVVMFD 113 56799****665544..4446***********..******************************998998..666665 PP
2	B3	34.6	3.4e-11	232	324	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 f+ ++ p +v k l++p + a ++ +e++++ltl+ + + W+ ++ +rk s ++G ++Fv +n+L+e D++vF+l +r ++ + v XP_019152838.1 232 FVVIMAPGNVYKGFFLSIPTDWAGKYLPTTEKNFDLTLRV-KENAWTTRCYHRKIS-----GSGYRKFVLENNLEEFDVCVFRLASRsDDIVFDV 320 67788889999999**********77778999999887.889**555555.....78*******************98867777777 PP EEE- CS B3 95 kvfr 98 ++fr XP_019152838.1 321 SIFR 324 7776 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGDDCRGCQK WEEHIYWSRF QAVQFFQILS GCYNEQLAVP QKFVNNLREK LAGCVALKGP 60 SGAIWNVGLT ACGEKLYFQR GWKEFVEEHS LQENDLLIFK YNGGSQFDVV MFDQQSYCEK 120 EASYFIRKCG HQELPSRGKA NGNPTPVTPL TPETNSESSV EVIRATTKRK KPREAQTSVK 180 QGTRGKRGAR KGSMSRIRSA EIQLKSNRRP VTEEEKANAI QMASAVASCY GFVVIMAPGN 240 VYKGFFLSIP TDWAGKYLPT TEKNFDLTLR VKENAWTTRC YHRKISGSGY RKFVLENNLE 300 EFDVCVFRLA SRSDDIVFDV SIFRVVEEVV PPSRVTQAVP SRCYKRRK

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGDDCRGCQK WEEHIYWSRF QAVQFFQILS GCYNEQLAVP QKFVNNLREK LAGCVALKGP  60
SGAIWNVGLT ACGEKLYFQR GWKEFVEEHS LQENDLLIFK YNGGSQFDVV MFDQQSYCEK  120
EASYFIRKCG HQELPSRGKA NGNPTPVTPL TPETNSESSV EVIRATTKRK KPREAQTSVK  180
QGTRGKRGAR KGSMSRIRSA EIQLKSNRRP VTEEEKANAI QMASAVASCY GFVVIMAPGN  240
VYKGFFLSIP TDWAGKYLPT TEKNFDLTLR VKENAWTTRC YHRKISGSGY RKFVLENNLE  300
EFDVCVFRLA SRSDDIVFDV SIFRVVEEVV PPSRVTQAVP SRCYKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-59	B3 family protein