PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152836.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 353aa MW: 39731.7 Da PI: 7.3537

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55	1.5e-17	37	113	15	97
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +l +p kfa++ +k ++l+ +sg W+v l + +++ +l+ GWkeFv+++ L+e+D++vFk++g+ +f v++f XP_019152836.1 37 QLAIPQKFADNLREK--LADSVSLKGPSGAIWNVDL--EAEGDKLYLKYGWKEFVEEHSLRENDVLVFKYNGNLQF--DVTMF 113 578****666655..5557***********..******************************997666..66665 PP
2	B3	41.4	2.6e-13	236	328	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 v+ +v k l++p + a++h + +++ ++l + ++W k+ y k+s++ + ++GWk+F+ +n L+ D +vF+l+++ s ++v XP_019152836.1 236 TVVMQECHVYKGFFLTIPAEWARSHLPQ--KNINVSLH-VNEKTWLAKC-YYKTSSHGLAGSGWKNFALDNFLEKDDACVFSLVSQsdSAVVFNV 326 56666778999999*********645..44567644.588***.66666666899*******************9955234444555 PP EE CS B3 95 kv 96 ++ XP_019152836.1 327 SI 328 55 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGDSDCGGCK KREENIYWSH FQTVQFFQIL CGHYDLQLAI PQKFADNLRE KLADSVSLKG 60 PSGAIWNVDL EAEGDKLYLK YGWKEFVEEH SLRENDVLVF KYNGNLQFDV TMFDGLTLCE 120 KEASYFIRHC EHRELTIRAI PISATPNSYH ETAANESSSH EEFEVTARKN PGNGFASINQ 180 STQAYGRPRK RPKSRNGGPS HVYPLQLKSN RRPVTEDEKG KAIQAASAAA VGDSFTVVMQ 240 ECHVYKGFFL TIPAEWARSH LPQKNINVSL HVNEKTWLAK CYYKTSSHGL AGSGWKNFAL 300 DNFLEKDDAC VFSLVSQSDS AVVFNVSIFR VVEEVVAPNR VIGTPSRKSL HPI

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGDSDCGGCK KREENIYWSH FQTVQFFQIL CGHYDLQLAI PQKFADNLRE KLADSVSLKG  60
PSGAIWNVDL EAEGDKLYLK YGWKEFVEEH SLRENDVLVF KYNGNLQFDV TMFDGLTLCE  120
KEASYFIRHC EHRELTIRAI PISATPNSYH ETAANESSSH EEFEVTARKN PGNGFASINQ  180
STQAYGRPRK RPKSRNGGPS HVYPLQLKSN RRPVTEDEKG KAIQAASAAA VGDSFTVVMQ  240
ECHVYKGFFL TIPAEWARSH LPQKNINVSL HVNEKTWLAK CYYKTSSHGL AGSGWKNFAL  300
DNFLEKDDAC VFSLVSQSDS AVVFNVSIFR VVEEVVAPNR VIGTPSRKSL HPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	194	PRKRPKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	9e-55	B3 family protein