PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152581.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 337aa MW: 37896.4 Da PI: 6.8448

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	188	236	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y+ksLq XP_019152581.1 188 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVKSLQ 236 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGTEDNGEMG LHLFQCGSYW DPLVSMDQSL HYPVLLDDQP INRNSHLLHY PSNSNLADML 60 PKITAFENEG FSEMISSFGA SDFHPNYAHN NVVSIQNSQE DCWNMEEVRK RKSSEPHSPS 120 HKNVEDNTAV DNSECSKQED EKKQKTEKSS SLMAKLAGKQ VKHDDSSNGK PRNENYVHMR 180 AKRGQATNSH SLAERVRRER ISERMRLLQE LVPGCNKITG KAVMLDEIIN YVKSLQQQVE 240 FLSMKLATVN PEINLDIQQA MTKEIFANVP RRGFSHGISS SQTFPGFRQG AFANIPNTIP 300 PIRPSPQNVL SNDLHSILPT TLDSSSSMSR MDPNTGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	145	RKRKSSEPHSPSHKNVEDNTAVDNSECSKQEDEKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-47	bHLH family protein