PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151894.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 944aa MW: 103869 Da PI: 4.6266

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.8	5e-56	30	126	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimkk+lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre++g XP_019151894.1 30 VREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYLDPLKVYLTRYREMDG 124 59********************************************************************************************9 PP NF-YB 96 ek 97 ++ XP_019151894.1 125 DE 126 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence
MSDGQASSQH PQSPGGGSHE SGEQSPRSNV REQDRFLPIA NISRIMKKAL PPNGKIAKDA 60 KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYLD PLKVYLTRYR 120 EMDGDEYLGV GAQDGVPNPS GDGTMDLNTQ RMFVGEVSVN GLGNEGTGID SAGSIEIVGS 180 NSLLSGVSQG QLITIQPSYA EEKDINHVAL VPRSREEESR TEEEGQFYVS DLVWGKVRSH 240 PWWPGQIFEP SAASQQAVKY FKRDSYLIAY FGDQTFAWNE VSQIKPFRTY FNQMEKQSST 300 ESFCHAVDCS LDEVSRRVEF GLSCSCVPKA VQCKFESQSV ANAGIRAESS QRDGGDKLST 360 VASFAPGALL QCLKSIATSP CCVVDRLGFV VARSQLLAFS RWKGYYELPA VEEFGGLSEY 420 DADTNVLQGL EGSVLDLTDN SSIPTGKRKS TIRGPYRKRK RLSKDNDCLE KNGTLMFGNI 480 SSLPDGGKDY MDESDGQINI ISSSNSHKPR DLISSELKVK RRKKLLPSGT GSNKSSPPRE 540 LLKIGERIQR AAVQLGGSTT VIKPGVEFLS LDKVLLNLSL DKVLLNLSLA AKDPTNGYHI 600 LAPFTNIFSG LREFTLETSK LKDQEVLVEK CRGESSLNYE TTESPAFNVI EDSYWTDRII 660 QGNLEGQMLY EPEDQNEKII PVGQLDAVFG LNPGADKQER GGILMQSEAE DPFGLVDGQQ 720 NLEEQAIFEP GTEDEKNIPV GQPDAVVGIN ADADNQERDT IIVQSEAEDP SGLVYGQQNL 780 EEQIIFEHGT EDEKNIPVGI NTDADNQERD TIIMQSEHED PSGSADGGAE EDDCPTALIL 840 NFKNLESVPS ATDLNKIFSR FGPLDESQTE GMHKTKRGKV VFKRRSDAEI AFNNAGTCSI 900 FGHALISYRL NYAPRPRKVP VSNRKRKKTP STESNDIQSL SGMT

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence

MSDGQASSQH PQSPGGGSHE SGEQSPRSNV REQDRFLPIA NISRIMKKAL PPNGKIAKDA  60
KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYLD PLKVYLTRYR  120
EMDGDEYLGV GAQDGVPNPS GDGTMDLNTQ RMFVGEVSVN GLGNEGTGID SAGSIEIVGS  180
NSLLSGVSQG QLITIQPSYA EEKDINHVAL VPRSREEESR TEEEGQFYVS DLVWGKVRSH  240
PWWPGQIFEP SAASQQAVKY FKRDSYLIAY FGDQTFAWNE VSQIKPFRTY FNQMEKQSST  300
ESFCHAVDCS LDEVSRRVEF GLSCSCVPKA VQCKFESQSV ANAGIRAESS QRDGGDKLST  360
VASFAPGALL QCLKSIATSP CCVVDRLGFV VARSQLLAFS RWKGYYELPA VEEFGGLSEY  420
DADTNVLQGL EGSVLDLTDN SSIPTGKRKS TIRGPYRKRK RLSKDNDCLE KNGTLMFGNI  480
SSLPDGGKDY MDESDGQINI ISSSNSHKPR DLISSELKVK RRKKLLPSGT GSNKSSPPRE  540
LLKIGERIQR AAVQLGGSTT VIKPGVEFLS LDKVLLNLSL DKVLLNLSLA AKDPTNGYHI  600
LAPFTNIFSG LREFTLETSK LKDQEVLVEK CRGESSLNYE TTESPAFNVI EDSYWTDRII  660
QGNLEGQMLY EPEDQNEKII PVGQLDAVFG LNPGADKQER GGILMQSEAE DPFGLVDGQQ  720
NLEEQAIFEP GTEDEKNIPV GQPDAVVGIN ADADNQERDT IIVQSEAEDP SGLVYGQQNL  780
EEQIIFEHGT EDEKNIPVGI NTDADNQERD TIIMQSEHED PSGSADGGAE EDDCPTALIL  840
NFKNLESVPS ATDLNKIFSR FGPLDESQTE GMHKTKRGKV VFKRRSDAEI AFNNAGTCSI  900
FGHALISYRL NYAPRPRKVP VSNRKRKKTP STESNDIQSL SGMT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	447	461	KRKSTIRGPYRKRKR
2	924	928	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.1	1e-61	NF-YB family protein