PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151847.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 282aa MW: 31413.8 Da PI: 5.1762

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.4	2.1e-15	6	93	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi.......aaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ + ++++ ++fdfl ++v + XP_019151847.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLSRGAKTVNSLHFkrdrewrKHCIQSYNVFDFLREVVSK 93 5789****************************************99999999998744331111122568899999**999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLSRGAK 60 TVNSLHFKRD REWRKHCIQS YNVFDFLREV VSKVPDYGHS DTGAEVPKRR KIATDELNDS 120 DDECKRSRME MSHPSGSGRG RGRGRGRGRG RGARADRDHR HTDVEFDSSV SSEHTTIQNP 180 DLGISKENCI ESKDSPRPDA NATDGDKPSV KDVNLNANLD ETADKSVTTP VAAAAAPPAA 240 PVNVTDEPPV LTEIDRMAVD PLHVAQFNSN VEEEEEDYDE EE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	148	RGRGRGRGRG
2	139	149	RGRGRGRGRGR
3	141	150	RGRGRGRGRG
4	141	151	RGRGRGRGRGR
5	143	152	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-62	NF-YC family protein