PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151400.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 383aa    MW: 43951.1 Da    PI: 9.4238
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032134157123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg++F +++ + +H +  H
  XP_019151400.1 134 YICRVCGRRFYTNERFINHFKQiH 157
                     89*****************88766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MWNLVKSSSI LNESCSFKKL RIVYPQLGFF RYCHFQLGSD GLGSSLDLAQ KKAQSIVGIF  60
WDLDNKPPKT LPPFEAASKL RKAAEQFGFV KYMIAYANHH SFNYVPPVVR QQRKERKVLN  120
ELENKGVVKP DEPYICRVCG RRFYTNERFI NHFKQIHERE QVKRLNQIES AKGSRRVKLV  180
AKYAMKMQKY KNAARDILTP KVGYGLADEL KRAGFWVRTV SNKPEAADIA LRDHLVDMMD  240
KRRVDCVLLI SDDSDFVDVL KEAKLRCLRT VVIGDSNDGA LKRTADASFS WQEITMEKAK  300
KEAVSVVGRW KDHDVLKTLE WTYDPGRDKK YYLSDIESEG SGSDIEHFLS GGNDDNSLQK  360
EDSGAWWELD SDTANMNRSS QSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-148C2H2 family protein