PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151329.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HRT-like

Protein Properties

Length: 513aa MW: 56752.1 Da PI: 9.3712

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	46.8	5.1e-15	283	313	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+Pv+g+KRC eH Gm++ XP_019151329.1 283 ICGVALGHGSVCIRSPVRGNKRCFEHRGMKV 313 8****************************97 PP
2	HRT-like	50	4.8e-16	341	371	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+iledGs C+++P ++KRC eHKG+R+ XP_019151329.1 341 ICGFILEDGSSCMTKPFGKNKRCIEHKGRRV 371 8*****************************7 PP
3	HRT-like	61.4	1.3e-19	431	461	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l dG++C+rqP gRKRCeeHKGmRi XP_019151329.1 431 ICGVNLHDGNFCTRQPSAGRKRCEEHKGMRI 461 8*****************************7 PP
4	HRT-like	28.9	2e-09	484	509	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 +CG++l++Gs C+r+ ++g+K C++H XP_019151329.1 484 TCGATLSNGSSCRRKLAEGNKQCWQH 509 7************************* PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MPAAAAAASS PVPAAAASAG DRLKREDCKR TKHDSAFSEW KILVGPSDWQ DYLLGNDGAE 60 RYRTQNLPNC ASCPGIYELG IAVSNPRSRL DTNKIDTAKI VPVYVGQADN VRTRLQQYGR 120 DGSHLENGCS KSEFSRDKNG CCQKGLAFFT SAFSRGFSIV YRWAPMKSKK DAEKAEAQLL 180 GKFDYAWNTD SNGARRHNDV FCKLERISRA SLLPAIIRRF KLKLQKPKGV KIEVCEPLPL 240 ENGSYFYGNT KRTHSLPQIL KFGRSRPRVV SVNFGINENP GTICGVALGH GSVCIRSPVR 300 GNKRCFEHRG MKVNGLTSKL IAEGNSHLPA ESLSGISDTL ICGFILEDGS SCMTKPFGKN 360 KRCIEHKGRR VPGSHLHKEH NMCSPIAESQ NVFSSSDTDL DQEGNMKEGW NESRTEQDDS 420 QSVMHRDCIT ICGVNLHDGN FCTRQPSAGR KRCEEHKGMR IKNPNTQHLN PPKTSDERSD 480 SITTCGATLS NGSSCRRKLA EGNKQCWQHR SIS

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MPAAAAAASS PVPAAAASAG DRLKREDCKR TKHDSAFSEW KILVGPSDWQ DYLLGNDGAE  60
RYRTQNLPNC ASCPGIYELG IAVSNPRSRL DTNKIDTAKI VPVYVGQADN VRTRLQQYGR  120
DGSHLENGCS KSEFSRDKNG CCQKGLAFFT SAFSRGFSIV YRWAPMKSKK DAEKAEAQLL  180
GKFDYAWNTD SNGARRHNDV FCKLERISRA SLLPAIIRRF KLKLQKPKGV KIEVCEPLPL  240
ENGSYFYGNT KRTHSLPQIL KFGRSRPRVV SVNFGINENP GTICGVALGH GSVCIRSPVR  300
GNKRCFEHRG MKVNGLTSKL IAEGNSHLPA ESLSGISDTL ICGFILEDGS SCMTKPFGKN  360
KRCIEHKGRR VPGSHLHKEH NMCSPIAESQ NVFSSSDTDL DQEGNMKEGW NESRTEQDDS  420
QSVMHRDCIT ICGVNLHDGN FCTRQPSAGR KRCEEHKGMR IKNPNTQHLN PPKTSDERSD  480
SITTCGATLS NGSSCRRKLA EGNKQCWQHR SIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-84	HRT-like family protein