PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151175.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 659aa MW: 71283.4 Da PI: 7.0151

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4.2e-08	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + GtC Gd C FaHg XP_019151175.1 266 PCPEFKK-GTCAKGDACEFAHG 286 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MCSGSKAKLC SFDLDMEKKN GILCKSCSKL LELSATDDVA GFICEVEEKG CDVNELSLWY 60 GRKIGSKKMM GLEERTPLAI ASMYGSTGVL NYILGTGKVD VNMACGSDGA TALHCVIAGG 120 SDSSLEVAKL LVAANADVNA LDANGNKPGD LIAPFQKLSS NLKRRALGLL LKGGGEVELA 180 DDEEEEQVKA VAPPKEGCEK KEYPIDTSLP DINTGIYGSD EFRMYSFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPSKY TYTCVPCPEF KKGTCAKGDA CEFAHGVFES WLHPAQYKTR 300 LCKDETGCSR KVCFFAHKPE ELRPLYASTG SAIPSPKSSS VSSMDTATLG PLALGSTPPM 360 SPTVSCSSPM GGNTWQNKMN FIPPALQLSG SRLKTALNAR DLDPDMELFS LESIRTQQQQ 420 RQQLIEEMAG LSSPSRWNGD YNRLGVGDLK PTNLDDVFGS LGDSSLSHLQ GLSPKVARSS 480 TSQLQSPTGL QIRQNMNQLR ASYPSNISSS PARKAAPTYG YDSSAAVAAA VMNSRSAAFA 540 KRSHSFIDRG GVIPRSSNSP PLMTSKMSDW GSPDGKLDWG FNGEELNKLK KSASFATRNG 600 SPASTRTSFL PSSHSDEPDV SWVHSLVKDV SSSEQKRRVH DSVPSWIDQM YIDQEQVVA

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MCSGSKAKLC SFDLDMEKKN GILCKSCSKL LELSATDDVA GFICEVEEKG CDVNELSLWY  60
GRKIGSKKMM GLEERTPLAI ASMYGSTGVL NYILGTGKVD VNMACGSDGA TALHCVIAGG  120
SDSSLEVAKL LVAANADVNA LDANGNKPGD LIAPFQKLSS NLKRRALGLL LKGGGEVELA  180
DDEEEEQVKA VAPPKEGCEK KEYPIDTSLP DINTGIYGSD EFRMYSFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPSKY TYTCVPCPEF KKGTCAKGDA CEFAHGVFES WLHPAQYKTR  300
LCKDETGCSR KVCFFAHKPE ELRPLYASTG SAIPSPKSSS VSSMDTATLG PLALGSTPPM  360
SPTVSCSSPM GGNTWQNKMN FIPPALQLSG SRLKTALNAR DLDPDMELFS LESIRTQQQQ  420
RQQLIEEMAG LSSPSRWNGD YNRLGVGDLK PTNLDDVFGS LGDSSLSHLQ GLSPKVARSS  480
TSQLQSPTGL QIRQNMNQLR ASYPSNISSS PARKAAPTYG YDSSAAVAAA VMNSRSAAFA  540
KRSHSFIDRG GVIPRSSNSP PLMTSKMSDW GSPDGKLDWG FNGEELNKLK KSASFATRNG  600
SPASTRTSFL PSSHSDEPDV SWVHSLVKDV SSSEQKRRVH DSVPSWIDQM YIDQEQVVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-166	C3H family protein