PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019150894.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 339aa    MW: 36901.9 Da    PI: 9.4288
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019150894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19197230134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  XP_019150894.1 197 CADCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 230
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MIPTYMTSSS SSPFPFDLNY TTADQYDDDQ NPNLFFTSSS NYQAAASSSS NNNHPSSSHL  60
FLNYDPQFYQ PPAPNANDNW GSYDNMEAKK GQAESGHNKW RKEEEKYENE GEKSPEKVMM  120
MPAKMKLVKK VRSSSDRANM EVVKINVSAT KIEDHHQKGP SLSSSLETDH SSHSSSSNNG  180
GNGNNNNNNN VLIVRVCADC NTTKTPLWRS GPKGPKSLCN ACGIRQRKAR RAMAAANGGA  240
NGTAPSSPST LKLKVQKTTV AKSNNNYPSH HQQPLKKRCK FVTAAEASAA PSSSDAAKNG  300
VEDFLKKLSN SLALHRVFPQ DEKDAAILLM AISCGLVHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-28GATA family protein