PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150843.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 732aa MW: 79465.6 Da PI: 6.0983

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_019150843.1 308 PCPDFHK-GACRRGDMCEYAHG 328 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MCSGPDQSNS SSSTSQSNSD TKLSMDSSQL TVVTDDCFSS FLELAANNDV EAFKRSIEHE 60 PSAVDEVGLW LVRKKGSKQI VNEERTPLMV AATYGSVDVL KLIISQPGVD VNQTCGPDRC 120 TALHCAASGG SVNATEVVKL LLSAGADPNI EDVNGQRPAD VIVVPLKLPG SRASLEELLL 180 SNISDGPVGE CHLQVSMTPS STSSPILSSS PENGSPCSPS DLLSSPRASE FSDVRANSAP 240 EKKEYPIDPS LPNIKNSIYS TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR 300 KYHYSCVPCP DFHKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGISC DRRVCFFAHT 360 SEELRPLYVS TGSAVPSPRS AAATASVMDM AGALSLLPGS PSSHSVMSPA FNQPMSPTAN 420 GMPNSSMAWP QPNVPTLHLP GSNFQSSRLR SSLNARDIPL EDLNMLQDFD SRQLLLNDLA 480 YFSQSRPNST TLSRSGCCSK TLTPSNLEEL FSAEITSSPR YSDQAAASGV FSPSHKSAVF 540 NQFQQQQSMF SPTNGNVFSP KNVEHPRLQA SFAVSSPGIM SPRTVEPISP MSSQLSAFAQ 600 REKQHQQIRS FSSRDLGSRN ASLIGSPVSN SWSNWGSPNT RIDWSVNGDE LGRLRKSSSF 660 EKLNSNGDEP DLSWVQSLVK ESPPEMKDKL TARTSGAVPS GEGLKSNSQT DSIDHSVLGA 720 WLEQMQLDQL VA

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MCSGPDQSNS SSSTSQSNSD TKLSMDSSQL TVVTDDCFSS FLELAANNDV EAFKRSIEHE  60
PSAVDEVGLW LVRKKGSKQI VNEERTPLMV AATYGSVDVL KLIISQPGVD VNQTCGPDRC  120
TALHCAASGG SVNATEVVKL LLSAGADPNI EDVNGQRPAD VIVVPLKLPG SRASLEELLL  180
SNISDGPVGE CHLQVSMTPS STSSPILSSS PENGSPCSPS DLLSSPRASE FSDVRANSAP  240
EKKEYPIDPS LPNIKNSIYS TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFHKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGISC DRRVCFFAHT  360
SEELRPLYVS TGSAVPSPRS AAATASVMDM AGALSLLPGS PSSHSVMSPA FNQPMSPTAN  420
GMPNSSMAWP QPNVPTLHLP GSNFQSSRLR SSLNARDIPL EDLNMLQDFD SRQLLLNDLA  480
YFSQSRPNST TLSRSGCCSK TLTPSNLEEL FSAEITSSPR YSDQAAASGV FSPSHKSAVF  540
NQFQQQQSMF SPTNGNVFSP KNVEHPRLQA SFAVSSPGIM SPRTVEPISP MSSQLSAFAQ  600
REKQHQQIRS FSSRDLGSRN ASLIGSPVSN SWSNWGSPNT RIDWSVNGDE LGRLRKSSSF  660
EKLNSNGDEP DLSWVQSLVK ESPPEMKDKL TARTSGAVPS GEGLKSNSQT DSIDHSVLGA  720
WLEQMQLDQL VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein