PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019149730.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 641aa MW: 71560.1 Da PI: 7.5003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019149730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rH+r+H XP_019149730.1 77 KCVKCFREFCSPVNYRRHMRLH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MSVAKFGTLG TPDATRSDEG NNSLDTFIRQ AIGKEPLLSF SRTGDSPVQL IQLLHALDQP 60 DLPGWPLLTP LKVQMQKCVK CFREFCSPVN YRRHMRLHRR SLNFDKESRK YRGLLGAFWD 120 KLTLEEVKKV ASLNDVSLKE IPGTSLVNGL SLSICKAMVW TLPSVYVKAG SALLEIIQAK 180 PCRLPLSSLE LFSILDDASE RTFLCAGTAE AVQKYVFDGE VAKVGLDLKN LIACTCFLFE 240 QKLVKAWLVD KDAEALRCQK LLVEEEEAAQ RRKAELLEIK RQKKLRQKEQ KARDQTNEEK 300 VDIIVMADSL DDSLMAGVSS PPASSDSNSS SNLDVSVDDS CLEMVHLNKD QAFEAQKFFN 360 ENFEMAVHNV EPQLVLANSQ EQLANSQWQV QKPQRPGRNG FYGSQNHQDL KVEPVQKHGP 420 PSVRGAVVID GKIWTRKVRP ENNESLRQVS QKKAISPNQS GCEVMIGSIS VPVKNCTQHQ 480 HGNNLEEAQD DSGDKQDSEP KKHNIPENQN KNVHSKYTTN RPSNKHWRPV SRHDRGRQDQ 540 EDGVLVKVDD RTLSSEIFQQ SHYMVNGNNK NHSCLPPEGN THSEGLPLCS SVAKAFLAQR 600 WKEAISADHV KLVLCPAPAT APEAQCDTLE ATSPSVRFSG T

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MSVAKFGTLG TPDATRSDEG NNSLDTFIRQ AIGKEPLLSF SRTGDSPVQL IQLLHALDQP  60
DLPGWPLLTP LKVQMQKCVK CFREFCSPVN YRRHMRLHRR SLNFDKESRK YRGLLGAFWD  120
KLTLEEVKKV ASLNDVSLKE IPGTSLVNGL SLSICKAMVW TLPSVYVKAG SALLEIIQAK  180
PCRLPLSSLE LFSILDDASE RTFLCAGTAE AVQKYVFDGE VAKVGLDLKN LIACTCFLFE  240
QKLVKAWLVD KDAEALRCQK LLVEEEEAAQ RRKAELLEIK RQKKLRQKEQ KARDQTNEEK  300
VDIIVMADSL DDSLMAGVSS PPASSDSNSS SNLDVSVDDS CLEMVHLNKD QAFEAQKFFN  360
ENFEMAVHNV EPQLVLANSQ EQLANSQWQV QKPQRPGRNG FYGSQNHQDL KVEPVQKHGP  420
PSVRGAVVID GKIWTRKVRP ENNESLRQVS QKKAISPNQS GCEVMIGSIS VPVKNCTQHQ  480
HGNNLEEAQD DSGDKQDSEP KKHNIPENQN KNVHSKYTTN RPSNKHWRPV SRHDRGRQDQ  540
EDGVLVKVDD RTLSSEIFQQ SHYMVNGNNK NHSCLPPEGN THSEGLPLCS SVAKAFLAQR  600
WKEAISADHV KLVLCPAPAT APEAQCDTLE ATSPSVRFSG T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-97	C2H2 family protein