PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021301162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 953aa MW: 105936 Da PI: 8.821 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.9 | 8.5e-09 | 210 | 231 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G++C+F H XP_021301162.1 210 TQICKEFMA-GRCRRGSQCQFLH 231 789******.************* PP | |||||||
2 | zf-CCCH | 22.9 | 1.5e-07 | 273 | 292 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G C++G++C+FaH+ XP_021301162.1 273 CNDYLK-GNCRRGASCRFAHD 292 ******.*************5 PP | |||||||
3 | zf-CCCH | 17.9 | 5.6e-06 | 334 | 354 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++fa+ G C+ G C+F+H XP_021301162.1 334 VPCKYFAA-GNCRNGKYCRFSH 354 59**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence |
MQFGWLEQMF TNLTALIRIR ATTFGEMSGS RKRGSKWDSK EERQYSLENV RDAAWPAKAG 60 VSFHDRESEH GYFSPEVGRN GNKWSFVEAS DMMKSKHGLP SRESLTGGRG ARKDENINVD 120 CVKNWKTTTP WDGDETYSMR MSPGLDDWRQ QNRRHSPKSD WTRSQSFTHK SRSRSWSRSR 180 SRSRSRSPVR GIRRQSGFHE RTRSRSGVST QICKEFMAGR CRRGSQCQFL HQDIQSHEDG 240 WDNRQKKAGG SKYCTSNDGK ECLMKSGRSS DCCNDYLKGN CRRGASCRFA HDGASDGFSR 300 GSINEVSRER ESNKRNRVAT PERDGEREAR RSDVPCKYFA AGNCRNGKYC RFSHHGQARA 360 SPERSRGDRG GWGQSSVSVD KLRDGAKFRD ADASYNVEKS RNGLKWSDAD ASNEAEKCWA 420 GPKWSDVDAS NDVDKSWTGS KWGDTGTYAG AANMSKDING KVGASESRFP DWSMDERWQR 480 NYDVSGKSSE TKVHHETVDI DKDETIPRKI ENAGLSTGVS EPRGAEESLG DMEMSPEWNY 540 RIPSSVKKEP SHSSMSQTPI DSSLTAHEKD IVEEASGRVC DGLAASQPIS IQKSNFQHDQ 600 VMRGNSAVAL PCDSNAASRN SAISHIDLNF SSSILQMKSF DQPGPSSSSL PYSNLNVVGQ 660 SQVAIPSDSN EVNVKVMQNN LLFQEEKPSN KMNFGDTNTS NGNSGTQSTQ NMVNSFASSG 720 GPIEPDSIPT VQPGQDVTFP KQYDPISDSI EPVKKQDTNT KPLGFSAHPV AQKNTADGKP 780 ELSANMLLPS SLVGSTNGGD YHNDLSSKRK PDSDSHMPNQ VERVASSEVT KENEGVEETK 840 KAQEENKNGP SENIDADDRT DEGKKSKDGK GIRAFKFALV EFVKDLLKPT WKEGQIGKDA 900 YKNIVKKVVD KVTATMQGAN IPQTPEKIDQ YLSFSKPKLS KLVQAYVEKF QKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 186 | RSRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-19 | C3H family protein |