PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021301161.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 967aa MW: 107170 Da PI: 8.7415

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021301161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.6e-09	184	205	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G++C+F H XP_021301161.1 184 TQICKEFMA-GRCRRGSQCQFLH 205 789****.*********** PP
2	zf-CCCH	22.8	1.6e-07	247	266	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G C++G++C+FaH+ XP_021301161.1 247 CNDYLK-GNCRRGASCRFAHD 266 ****.***********5 PP
3	zf-CCCH	17.9	5.7e-06	308	328	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++fa+ G C+ G C+F+H XP_021301161.1 308 VPCKYFAA-GNCRNGKYCRFSH 328 599999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence
MSGSRKRGSK WDSKEERQYS LENVRDAAWP AKAGVSFHDR ESEHGYFSPE VGRNGNKWSF 60 VEASDMMKSK HGLPSRESLT GGRGARKDEN INVDCVKNWK TTTPWDGDET YSMRMSPGLD 120 DWRQQNRRHS PKSDWTRSQS FTHKSRSRSW SRSRSRSRSR SPVRGIRRQS GFHERTRSRS 180 GVSTQICKEF MAGRCRRGSQ CQFLHQDIQS HEDGWDNRQK KAGGSKYCTS NDGKECLMKS 240 GRSSDCCNDY LKGNCRRGAS CRFAHDGASD GFSRGSINEV SRERESNKRN RVATPERDGE 300 REARRSDVPC KYFAAGNCRN GKYCRFSHHG QARASPERSR GDRGGWGQSS VSVDKLRDGA 360 KFRDADASYN VEKSRNGLKW SDADASNEAE KCWAGPKWSD VDASNDVDKS WTGSKWGDTG 420 TYAGAANMSK DINGKVGASE SRFPDWSMDE RWQRNYDVSG KSSETKVHHE TVDIDKDETI 480 PRKIENAGLS TGVSEPRGAE ESLGDMEMSP EWNYRIPSSV KKEPSHSSMS QTPIDSSLTA 540 HEKDIVEEAS GRVCDGLAAS QPISIQKSNF QHDQVMRGNS AVALPCDSNA ASRNSAISHI 600 DLNFSSSILQ MKSFDQPGPS SSSLPYSNLN VVGQSQVAIP SDSNEVNVKV MQNNLLFQEE 660 KPSNKMNFGD TNTSNGNSGT QSTQNMVSNE QLTHLTNLSA SLAQLFGKGQ QLPLLHVALN 720 AHDAMQVNSF ASSGGPIEPD SIPTVQPGQD VTFPKQYDPI SDSIEPVKKQ DTNTKPLGFS 780 AHPVAQKNTA DGKPELSANM LLPSSLVGST NGGDYHNDLS SKRKPDSDSH MPNQVERVAS 840 SEVTKENEGV EETKKAQEEN KNGPSENIDA DDRTDEGKKS KDGKGIRAFK FALVEFVKDL 900 LKPTWKEGQI GKDAYKNIVK KVVDKVTATM QGANIPQTPE KIDQYLSFSK PKLSKLVQAY 960 VEKFQKN

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence

MSGSRKRGSK WDSKEERQYS LENVRDAAWP AKAGVSFHDR ESEHGYFSPE VGRNGNKWSF  60
VEASDMMKSK HGLPSRESLT GGRGARKDEN INVDCVKNWK TTTPWDGDET YSMRMSPGLD  120
DWRQQNRRHS PKSDWTRSQS FTHKSRSRSW SRSRSRSRSR SPVRGIRRQS GFHERTRSRS  180
GVSTQICKEF MAGRCRRGSQ CQFLHQDIQS HEDGWDNRQK KAGGSKYCTS NDGKECLMKS  240
GRSSDCCNDY LKGNCRRGAS CRFAHDGASD GFSRGSINEV SRERESNKRN RVATPERDGE  300
REARRSDVPC KYFAAGNCRN GKYCRFSHHG QARASPERSR GDRGGWGQSS VSVDKLRDGA  360
KFRDADASYN VEKSRNGLKW SDADASNEAE KCWAGPKWSD VDASNDVDKS WTGSKWGDTG  420
TYAGAANMSK DINGKVGASE SRFPDWSMDE RWQRNYDVSG KSSETKVHHE TVDIDKDETI  480
PRKIENAGLS TGVSEPRGAE ESLGDMEMSP EWNYRIPSSV KKEPSHSSMS QTPIDSSLTA  540
HEKDIVEEAS GRVCDGLAAS QPISIQKSNF QHDQVMRGNS AVALPCDSNA ASRNSAISHI  600
DLNFSSSILQ MKSFDQPGPS SSSLPYSNLN VVGQSQVAIP SDSNEVNVKV MQNNLLFQEE  660
KPSNKMNFGD TNTSNGNSGT QSTQNMVSNE QLTHLTNLSA SLAQLFGKGQ QLPLLHVALN  720
AHDAMQVNSF ASSGGPIEPD SIPTVQPGQD VTFPKQYDPI SDSIEPVKKQ DTNTKPLGFS  780
AHPVAQKNTA DGKPELSANM LLPSSLVGST NGGDYHNDLS SKRKPDSDSH MPNQVERVAS  840
SEVTKENEGV EETKKAQEEN KNGPSENIDA DDRTDEGKKS KDGKGIRAFK FALVEFVKDL  900
LKPTWKEGQI GKDAYKNIVK KVVDKVTATM QGANIPQTPE KIDQYLSFSK PKLSKLVQAY  960
VEKFQKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-19	C3H family protein