PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021301160.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 993aa MW: 110228 Da PI: 8.7415

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021301160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.8	8.9e-09	210	231	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G++C+F H XP_021301160.1 210 TQICKEFMA-GRCRRGSQCQFLH 231 789****.*********** PP
2	zf-CCCH	22.8	1.6e-07	273	292	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G C++G++C+FaH+ XP_021301160.1 273 CNDYLK-GNCRRGASCRFAHD 292 ****.***********5 PP
3	zf-CCCH	17.8	5.8e-06	334	354	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++fa+ G C+ G C+F+H XP_021301160.1 334 VPCKYFAA-GNCRNGKYCRFSH 354 599999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MQFGWLEQMF TNLTALIRIR ATTFGEMSGS RKRGSKWDSK EERQYSLENV RDAAWPAKAG 60 VSFHDRESEH GYFSPEVGRN GNKWSFVEAS DMMKSKHGLP SRESLTGGRG ARKDENINVD 120 CVKNWKTTTP WDGDETYSMR MSPGLDDWRQ QNRRHSPKSD WTRSQSFTHK SRSRSWSRSR 180 SRSRSRSPVR GIRRQSGFHE RTRSRSGVST QICKEFMAGR CRRGSQCQFL HQDIQSHEDG 240 WDNRQKKAGG SKYCTSNDGK ECLMKSGRSS DCCNDYLKGN CRRGASCRFA HDGASDGFSR 300 GSINEVSRER ESNKRNRVAT PERDGEREAR RSDVPCKYFA AGNCRNGKYC RFSHHGQARA 360 SPERSRGDRG GWGQSSVSVD KLRDGAKFRD ADASYNVEKS RNGLKWSDAD ASNEAEKCWA 420 GPKWSDVDAS NDVDKSWTGS KWGDTGTYAG AANMSKDING KVGASESRFP DWSMDERWQR 480 NYDVSGKSSE TKVHHETVDI DKDETIPRKI ENAGLSTGVS EPRGAEESLG DMEMSPEWNY 540 RIPSSVKKEP SHSSMSQTPI DSSLTAHEKD IVEEASGRVC DGLAASQPIS IQKSNFQHDQ 600 VMRGNSAVAL PCDSNAASRN SAISHIDLNF SSSILQMKSF DQPGPSSSSL PYSNLNVVGQ 660 SQVAIPSDSN EVNVKVMQNN LLFQEEKPSN KMNFGDTNTS NGNSGTQSTQ NMVSNEQLTH 720 LTNLSASLAQ LFGKGQQLPL LHVALNAHDA MQVNSFASSG GPIEPDSIPT VQPGQDVTFP 780 KQYDPISDSI EPVKKQDTNT KPLGFSAHPV AQKNTADGKP ELSANMLLPS SLVGSTNGGD 840 YHNDLSSKRK PDSDSHMPNQ VERVASSEVT KENEGVEETK KAQEENKNGP SENIDADDRT 900 DEGKKSKDGK GIRAFKFALV EFVKDLLKPT WKEGQIGKDA YKNIVKKVVD KVTATMQGAN 960 IPQTPEKIDQ YLSFSKPKLS KLVQAYVEKF QKN

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MQFGWLEQMF TNLTALIRIR ATTFGEMSGS RKRGSKWDSK EERQYSLENV RDAAWPAKAG  60
VSFHDRESEH GYFSPEVGRN GNKWSFVEAS DMMKSKHGLP SRESLTGGRG ARKDENINVD  120
CVKNWKTTTP WDGDETYSMR MSPGLDDWRQ QNRRHSPKSD WTRSQSFTHK SRSRSWSRSR  180
SRSRSRSPVR GIRRQSGFHE RTRSRSGVST QICKEFMAGR CRRGSQCQFL HQDIQSHEDG  240
WDNRQKKAGG SKYCTSNDGK ECLMKSGRSS DCCNDYLKGN CRRGASCRFA HDGASDGFSR  300
GSINEVSRER ESNKRNRVAT PERDGEREAR RSDVPCKYFA AGNCRNGKYC RFSHHGQARA  360
SPERSRGDRG GWGQSSVSVD KLRDGAKFRD ADASYNVEKS RNGLKWSDAD ASNEAEKCWA  420
GPKWSDVDAS NDVDKSWTGS KWGDTGTYAG AANMSKDING KVGASESRFP DWSMDERWQR  480
NYDVSGKSSE TKVHHETVDI DKDETIPRKI ENAGLSTGVS EPRGAEESLG DMEMSPEWNY  540
RIPSSVKKEP SHSSMSQTPI DSSLTAHEKD IVEEASGRVC DGLAASQPIS IQKSNFQHDQ  600
VMRGNSAVAL PCDSNAASRN SAISHIDLNF SSSILQMKSF DQPGPSSSSL PYSNLNVVGQ  660
SQVAIPSDSN EVNVKVMQNN LLFQEEKPSN KMNFGDTNTS NGNSGTQSTQ NMVSNEQLTH  720
LTNLSASLAQ LFGKGQQLPL LHVALNAHDA MQVNSFASSG GPIEPDSIPT VQPGQDVTFP  780
KQYDPISDSI EPVKKQDTNT KPLGFSAHPV AQKNTADGKP ELSANMLLPS SLVGSTNGGD  840
YHNDLSSKRK PDSDSHMPNQ VERVASSEVT KENEGVEETK KAQEENKNGP SENIDADDRT  900
DEGKKSKDGK GIRAFKFALV EFVKDLLKPT WKEGQIGKDA YKNIVKKVVD KVTATMQGAN  960
IPQTPEKIDQ YLSFSKPKLS KLVQAYVEKF QKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-19	C3H family protein