PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300745.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 711aa MW: 79736.8 Da PI: 9.2561

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.9	5e-15	3	78	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p f+++++g +k+ +l++ +g++W v l + g+ ++t+GW++F+++n L+ gDf++Fk+dg+ f v +f XP_021300745.1 3 KIPPAFIRHFDGT--IPKDAMLKNHTGKQWLVDL--EEVEGGLTMTNGWQGFASENFLEFGDFLIFKYDGKCLF--DVEIFG 78 59***888877..7889***********..******************************996666..777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MQKIPPAFIR HFDGTIPKDA MLKNHTGKQW LVDLEEVEGG LTMTNGWQGF ASENFLEFGD 60 FLIFKYDGKC LFDVEIFGRN GCNKAALSSS VTTTLAVNEK EIKEVEKCNG PTQTCKQKYS 120 VKNLGLAEGC RYKLRRNRGT NLGEGKALNA ATYVTPKGPY FVSNIHQSMR YAVYVPRSLL 180 ASYGIKVKPE VVLLDQNGKK WPVMSKKPST HRKRVCTAPQ AGGALPVIGH MHLLGGQQLT 240 HETLGAMADN YGPVFSIRLG SHRALVLNSW EMAKECFTVH DKVFSTRPVI TASKLLGYNY 300 AMFGFAPYGS YWREMHRIAT IELLSIHRID MLKHIRASEV KTAVRELYKS WLSKGGGETV 360 VLADMKQWFG DLTHNIALRM VGGKRYFGPN ADCEEAEARR CQKVMRDFAY CXGVFVVSDA 420 IPFLGWLDFQ GYEKAMKRTP KELDILVGGW LEEHKQKKHL GGGLKQEQDF MDVMLNILED 480 AKITSLDADT INKATCLNLV LAGSGTTMVT LTWALSLLLN NPRVLKKAQD EVDIHVGKGR 540 PLEESDIRNL VYLRAIVKKT LRLYPPSPII FRASMEDCTL STGYHIPAGT RLMVNTWKIQ 600 RDERVWPDPD VLKPERFLTS HKDMDFRGQT FELNPFGSGR RSCPGVSLAL QVVHSALASF 660 LQSFEVPKPS KLEDVDMTES TGLXNPKATP LEVLFTPRLD SKLYGLGTEL M

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MQKIPPAFIR HFDGTIPKDA MLKNHTGKQW LVDLEEVEGG LTMTNGWQGF ASENFLEFGD  60
FLIFKYDGKC LFDVEIFGRN GCNKAALSSS VTTTLAVNEK EIKEVEKCNG PTQTCKQKYS  120
VKNLGLAEGC RYKLRRNRGT NLGEGKALNA ATYVTPKGPY FVSNIHQSMR YAVYVPRSLL  180
ASYGIKVKPE VVLLDQNGKK WPVMSKKPST HRKRVCTAPQ AGGALPVIGH MHLLGGQQLT  240
HETLGAMADN YGPVFSIRLG SHRALVLNSW EMAKECFTVH DKVFSTRPVI TASKLLGYNY  300
AMFGFAPYGS YWREMHRIAT IELLSIHRID MLKHIRASEV KTAVRELYKS WLSKGGGETV  360
VLADMKQWFG DLTHNIALRM VGGKRYFGPN ADCEEAEARR CQKVMRDFAY CXGVFVVSDA  420
IPFLGWLDFQ GYEKAMKRTP KELDILVGGW LEEHKQKKHL GGGLKQEQDF MDVMLNILED  480
AKITSLDADT INKATCLNLV LAGSGTTMVT LTWALSLLLN NPRVLKKAQD EVDIHVGKGR  540
PLEESDIRNL VYLRAIVKKT LRLYPPSPII FRASMEDCTL STGYHIPAGT RLMVNTWKIQ  600
RDERVWPDPD VLKPERFLTS HKDMDFRGQT FELNPFGSGR RSCPGVSLAL QVVHSALASF  660
LQSFEVPKPS KLEDVDMTES TGLXNPKATP LEVLFTPRLD SKLYGLGTEL M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-24	B3 family protein