PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021299766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | TCP | ||||||||
Protein Properties | Length: 374aa MW: 40398.7 Da PI: 8.722 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.4 | 7e-40 | 51 | 161 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ XP_021299766.1 51 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAShlrntyf 145 789******************************************************************99976666666666444444444455 PP TCP 89 ...............k 89 + XP_021299766.1 146 npnfstqqlrmrsewE 161 4443333333333330 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence |
MIMDGENGIR RPNFPLQLLE KKEHQQEPPC SSSGNAEPSA KTASEAPKKP PPKRTSTKDR 60 HTKVEGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLNISLRS SGSSMSASHL RNTYFNPNFS TQQLRMRSEW ERNVLDDSPS HQQHRRILFP 180 GVALSSDDSL NFPSSSSMNA FLQAKQELRD TSVDVAEEAD TSVGKKRRAD QHQDLSQNQV 240 GSYLLQSTTG SIPASHNPNP ATFWMVTNPS NQVMSGSGAG DPMWTFPSSS NTNMYRGSMS 300 SGVHFMNFAT PMALLPGQQF GSGIGAGGSV TDSHLGVLAA LNAYRQIPGS NVSDSPASGS 360 HQHHGGGDRH DSTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 4e-50 | TCP family protein |