PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299314.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 468aa MW: 52583.5 Da PI: 6.6354

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.3e-12	91	113	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G +CkF+H+ XP_021299314.1 91 EDCSFYLKTGNCKFGLNCKFNHP 113 89********************9 PP
2	zf-CCCH	24.2	5.9e-08	136	158	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tG C+yG+ C++ H++ XP_021299314.1 136 ECKYYRATGGCRYGNACRYRHSK 158 7******************9985 PP
3	zf-CCCH	27.8	4.2e-09	196	218	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ +G CkyG C+++H++ XP_021299314.1 196 ECKYYLTSGGCKYGKACRYSHSK 218 7********************95 PP
4	zf-CCCH	37.7	3.4e-12	246	268	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C yG++C+F+H+ XP_021299314.1 246 KECPYYMRTGSCAYGPNCRFNHP 268 68********************9 PP
5	zf-CCCH	33.1	9.8e-11	383	409	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Cky + CkF+H++ XP_021299314.1 383 PGEPECPYFMKTGYCKYKAACKFHHPK 409 5799*********************96 PP
6	zf-CCCH	24.6	4.4e-08	430	455	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ ++G+CkyG +C F+H++ XP_021299314.1 430 DRKICWNYEKYGICKYGTNCFFHHPE 455 7899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MGSCEEYYSS LPETPNQTQT ESASGFNSST LLCNLYPGAE KEEESLVEGL KNVTLEESDR 60 KSYAGDDNSE NLQEDWQNGE NYQYPLRPYA EDCSFYLKTG NCKFGLNCKF NHPVGGGSQD 120 KENHKGWTAE QTGQIECKYY RATGGCRYGN ACRYRHSKED CVLAPLEVNS FGLPAQVGIN 180 EKREKDDCVE QTGQIECKYY LTSGGCKYGK ACRYSHSKEK SRYLEKSEIP PPDLNFLGLP 240 IRMLEKECPY YMRTGSCAYG PNCRFNHPDP TAAEGSNILS SDSSGFGGHS SGNYNRESRL 300 LPMSSKPTAA SLSLNMMPDK HVPYLNQSSS YAHGMHLNSE WNGHQEKTSL PYSAPSIHNA 360 INMADNSKLH QEQIQADEFP ERPGEPECPY FMKTGYCKYK AACKFHHPKT RPSKPPVFIL 420 SSAGLPLRPD RKICWNYEKY GICKYGTNCF FHHPENHFSS ACPVDSIP

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MGSCEEYYSS LPETPNQTQT ESASGFNSST LLCNLYPGAE KEEESLVEGL KNVTLEESDR  60
KSYAGDDNSE NLQEDWQNGE NYQYPLRPYA EDCSFYLKTG NCKFGLNCKF NHPVGGGSQD  120
KENHKGWTAE QTGQIECKYY RATGGCRYGN ACRYRHSKED CVLAPLEVNS FGLPAQVGIN  180
EKREKDDCVE QTGQIECKYY LTSGGCKYGK ACRYSHSKEK SRYLEKSEIP PPDLNFLGLP  240
IRMLEKECPY YMRTGSCAYG PNCRFNHPDP TAAEGSNILS SDSSGFGGHS SGNYNRESRL  300
LPMSSKPTAA SLSLNMMPDK HVPYLNQSSS YAHGMHLNSE WNGHQEKTSL PYSAPSIHNA  360
INMADNSKLH QEQIQADEFP ERPGEPECPY FMKTGYCKYK AACKFHHPKT RPSKPPVFIL  420
SSAGLPLRPD RKICWNYEKY GICKYGTNCF FHHPENHFSS ACPVDSIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-73	C3H family protein