PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299038.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 311aa MW: 33241 Da PI: 9.4774

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.2e-39	69	154	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a+ s+s+++ s XP_021299038.1 69 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGGSVSQQG-ASL 154 789******************************************************************99854444444443.222 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MDPKGSKQPP QEVPNFLTLP PQPQQHHQHP QPQQQQQQPQ NMGENKPAEI KDFQIVIADK 60 EEGKKQQLAP KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ 120 QAEPSIIAAT GSGTIPASAL AAAGGSVSQQ GASLSAGLHQ KMEDLGGSSI GSGSSRTSWA 180 MVGGNLGRPH HVATGLWPPV SGYGFQSSSG PSTTNLGSES SNYLQKIGFP GFDLPAANMG 240 QMSFTSILGG ASQQLPGLEL GLSQDGHIGL LNPQALSQIY QQMGQARVHQ QQQQQHQQQP 300 PAKDDSQGSG Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-80	TCP family protein