PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298476.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 456aa MW: 52989.9 Da PI: 9.0729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	18	39	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C++ ++++ +L+rH+++ H XP_021298476.1 18 CHLCDRDCRTWKELMRHQKRrH 39 *******************999 PP
2	zf-C2H2	11.9	0.00071	45	64	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ykC Cg+ F++k+ k H XP_021298476.1 45 YKCDLCGRGFPTKEARKEHR 64 9************9999996 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MSSKAVENIS RRDYDSLCHL CDRDCRTWKE LMRHQKRRHA AQIKYKCDLC GRGFPTKEAR 60 KEHRLLIMDS ARSWFKKFQQ KNENSPKKKK EMENAKYAHK PPIDGAGAPS TATKQKAAAA 120 KQYIENHYKA QMKNLQDRRE RRWMLERKLA DADITAEEQM SMLKFLEKKE TEYMRLQRHK 180 MGVDDFELLT IIGRGAFGEV RLXXXXATGN VYAVKKLQKS EXXXXGQVEH VKAERNLLAE 240 VDSECIVKLY CSFQDDEYLY LVMEYLPGGD MMTLLMRKDT LTEDEARFYV GQTVLAIESI 300 HKRNYIHRDI KPDNLLLDRN GHMKLSDFGL CKPLDSSSFP DLREHDYGGG RNVKPSMESG 360 KHSNLPPTPR RTQQEQLLHW QKNRRTLAYS TVGTPDYIAP EVLLKRGYGM ECDWWSLGAI 420 MFEMLVGYPP FYSEEPLSTC RKVSEVVGFV ITILDA

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MSSKAVENIS RRDYDSLCHL CDRDCRTWKE LMRHQKRRHA AQIKYKCDLC GRGFPTKEAR  60
KEHRLLIMDS ARSWFKKFQQ KNENSPKKKK EMENAKYAHK PPIDGAGAPS TATKQKAAAA  120
KQYIENHYKA QMKNLQDRRE RRWMLERKLA DADITAEEQM SMLKFLEKKE TEYMRLQRHK  180
MGVDDFELLT IIGRGAFGEV RLXXXXATGN VYAVKKLQKS EXXXXGQVEH VKAERNLLAE  240
VDSECIVKLY CSFQDDEYLY LVMEYLPGGD MMTLLMRKDT LTEDEARFYV GQTVLAIESI  300
HKRNYIHRDI KPDNLLLDRN GHMKLSDFGL CKPLDSSSFP DLREHDYGGG RNVKPSMESG  360
KHSNLPPTPR RTQQEQLLHW QKNRRTLAYS TVGTPDYIAP EVLLKRGYGM ECDWWSLGAI  420
MFEMLVGYPP FYSEEPLSTC RKVSEVVGFV ITILDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	116	KKKKEMENAKYAHKPPIDGAGAPSTATKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	5e-18	WRKY family protein