PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G12020.2 | ||||||||
Common Name | ATWRKY19, F16J13.90, MAPKKK11, MEKK4, WRKY19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 1895aa MW: 210322 Da PI: 6.7535 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.2 | 1.9e-29 | 467 | 524 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++DgynW+KYGqK+vkgs+fp sYY+Ct+ gCp+k+kvers d++v ei+Y+++Hnhe AT4G12020.2 467 VNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSL-DGQVAEIVYKDRHNHE 524 58****************************************.***************8 PP | |||||||
2 | WRKY | 33.5 | 8.4e-11 | 640 | 661 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr AT4G12020.2 640 LDDGYRWRKYGQKVVKGNPYPR 661 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51477 | 14.353 | 291 | 371 | IPR003822 | Paired amphipathic helix |
SuperFamily | SSF47762 | 3.79E-17 | 302 | 370 | IPR003822 | Paired amphipathic helix |
Gene3D | G3DSA:1.20.1160.11 | 3.2E-15 | 302 | 370 | IPR003822 | Paired amphipathic helix |
Pfam | PF02671 | 4.4E-12 | 324 | 368 | IPR003822 | Paired amphipathic helix |
PROSITE profile | PS50811 | 21.207 | 462 | 526 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.5E-23 | 463 | 526 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-21 | 466 | 526 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-30 | 467 | 525 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-21 | 468 | 524 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-12 | 625 | 661 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-9 | 632 | 662 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.952 | 635 | 661 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-6 | 640 | 689 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-6 | 641 | 661 | IPR003657 | WRKY domain |
SuperFamily | SSF52200 | 1.15E-9 | 661 | 785 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 3.06E-37 | 801 | 1062 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.4E-17 | 822 | 1030 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 6.5E-9 | 835 | 973 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 1.4E-15 | 839 | 854 | No hit | No description |
PRINTS | PR00364 | 1.4E-15 | 915 | 929 | No hit | No description |
SuperFamily | SSF46785 | 8.16E-7 | 1041 | 1142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 3.23E-41 | 1160 | 1448 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 2.5E-33 | 1166 | 1446 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 2.3E-5 | 1228 | 1247 | IPR011713 | Leucine-rich repeat 3 |
PRINTS | PR00364 | 1.4E-15 | 1325 | 1341 | No hit | No description |
SuperFamily | SSF56112 | 2.46E-72 | 1611 | 1878 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 3.4E-26 | 1622 | 1734 | No hit | No description |
PROSITE profile | PS50011 | 44.386 | 1626 | 1877 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 1.7E-58 | 1627 | 1877 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 1.9E-44 | 1735 | 1878 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004674 | Molecular Function | protein serine/threonine kinase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1895 aa Download sequence Send to blast |
MSEKEELPLT LTSIGAATAT SDYHQRVGSS GEGISSSSSD VDPRFMQNSP TGLMISQSSS 60 MCTVPPGMAA TPPISSGSGL SQQLNNSSSS KLCQVEGCQK GARDASGRCI SHGGGRRCQK 120 PDCQKGAEGK TVYCKAHGGG RRCEYLGCTK GAEGSTDFCI AHGGGRRCNH EDCTRSAWGR 180 TEFCVKHGGG ARCKTYGCGK SASGPLPFCR AHGGGKKCSH EDCTGFARGR SGLCLMHGGG 240 KRCQRENCTK SAEGLSGLCI SHGGGRRCQS IGCTKGAKGS KMFCKACITK RPLTIDGGGN 300 MGGVTTGDAL NYLKAVKDKF EDSEKYDTFL EVLNDCKHQG VDTSGVIARL KDLFKGHDDL 360 LLGFNTYLSK EYQITILPED DFPIDFLDKV EGPYEMTYQQ AQTVQANANM QPQTEYPSSS 420 AVQSFSSGQP QIPTSAPDSS LLAKSNTSGI TIIEHMSQQP LNVDKQVNDG YNWQKYGQKK 480 VKGSKFPLSY YKCTYLGCPS KRKVERSLDG QVAEIVYKDR HNHEPPNQGK DGSTTYLSGS 540 STHINCMSSE LTASQFSSNK TKIEQQEAAS LATTIEYMSE ASDNEEDSNG ETSEGEKDED 600 EPEPKRRITE VQVSELADAS DRTVREPRVI FQTTSEVDNL DDGYRWRKYG QKVVKGNPYP 660 RFSSSKDYDV VIRYGRADIS NEDFISHLRA SLCRRGISVY EKFNEVDALP KCRVLIIVLT 720 STYVPSNLLN ILEHQHTEDR VVYPIFYRLS PYDFVCNSKN YERFYLQDEP KKWQAALKEI 780 TQMPGYTLTD KSESELIDEI VRDALKVLCS ADKVNMIGMD MQVEEILSLL CIESLDVRSI 840 GIWGTVGIGK TTIAEEIFRK ISVQYETCVV LKDLHKEVEV KGHDAVRENF LSEVLEVEPH 900 VIRISDIKTS FLRSRLQRKR ILVILDDVND YRDVDTFLGT LNYFGPGSRI IMTSRNRRVF 960 VLCKIDHVYE VKPLDIPKSL LLLDRGTCQI VLSPEVYKTL SLELVKFSNG NPQVLQFLSS 1020 IDREWNKLSQ EVKTTSPIYI PGIFEKSCCG LDDNERGIFL DIACFFNRID KDNVAMLLDG 1080 CGFSAHVGFR GLVDKSLLTI SQHNLVDMLS FIQATGREIV RQESADRPGD RSRLWNADYI 1140 RHVFINDTGT SAIEGIFLDM LNLKFDANPN VFEKMCNLRL LKLYCSKAEE KHGVSFPQGL 1200 EYLPSKLRLL HWEYYPLSSL PKSFNPENLV ELNLPSSCAK KLWKGKKARF CTTNSSLEKL 1260 KKMRLSYSDQ LTKIPRLSSA TNLEHIDLEG CNSLLSLSQS ISYLKKLVFL NLKGCSKLEN 1320 IPSMVDLESL EVLNLSGCSK LGNFPEISPN VKELYMGGTM IQEIPSSIKN LVLLEKLDLE 1380 NSRHLKNLPT SIYKLKHLET LNLSGCISLE RFPDSSRRMK CLRFLDLSRT DIKELPSSIS 1440 YLTALDELLF VDSRRNSPVV TNPNANSTEL MPSESSKLEI LGTPADNEVV VGGTVEKTRG 1500 IERTPTILVK SREYLIPDDV VAVGGDIKGL RPPVLQLQPA MKLSHIPRGS TWDFVTHFAP 1560 PETVAPPSSS SEAREEEVET EETGAMFIPL GDKETCSFTV NKGDSSRTIS NTSPIYASEG 1620 SFITCWQKGQ LLGRGSLGSV YEGISADGDF FAFKEVSLLD QGSQAHEWIQ QVEGGIALLS 1680 QLQHQNIVRY RGTTKDESNL YIFLELVTQG SLRKLYQRNQ LGDSVVSLYT RQILDGLKYL 1740 HDKGFIHRNI KCANVLVDAN GTVKLADFGL AKVMSLWRTP YWNWMAPEVI LNPKDYDGYG 1800 TPADIWSLGC TVLEMLTGQI PYSDLEIGTA LYNIGTGKLP KIPDILSLDA RDFILTCLKV 1860 NPEERPTAAE LLNHPFVNMP LPSSGSGSVS SLLRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2clq_A | 4e-43 | 1631 | 1879 | 29 | 284 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 |
2clq_B | 4e-43 | 1631 | 1879 | 29 | 284 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 |
4bid_A | 5e-43 | 1631 | 1879 | 26 | 281 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 |
4bid_B | 5e-43 | 1631 | 1879 | 26 | 281 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 |
4bie_A | 5e-43 | 1631 | 1879 | 26 | 281 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 |
4bie_B | 5e-43 | 1631 | 1879 | 26 | 281 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 |
5vil_A | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vil_B | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vil_C | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vil_D | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vio_A | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vio_B | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vio_C | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
5vio_D | 4e-43 | 1631 | 1879 | 27 | 282 | Mitogen-activated protein kinase kinase kinase 5 |
6e2m_A | 3e-43 | 1631 | 1879 | 29 | 284 | Mitogen-activated protein kinase kinase kinase 5 |
6e2m_B | 3e-43 | 1631 | 1879 | 29 | 284 | Mitogen-activated protein kinase kinase kinase 5 |
6e2n_A | 3e-43 | 1631 | 1879 | 29 | 284 | Mitogen-activated protein kinase kinase kinase 5 |
6e2n_B | 3e-43 | 1631 | 1879 | 29 | 284 | Mitogen-activated protein kinase kinase kinase 5 |
6e2o_A | 3e-43 | 1631 | 1879 | 29 | 284 | Mitogen-activated protein kinase kinase kinase 5 |
6e2o_B | 3e-43 | 1631 | 1879 | 29 | 284 | Mitogen-activated protein kinase kinase kinase 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.3076 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 254852_at | 0.0 | ||||
Expression Atlas | AT4G12020 | - | ||||
AtGenExpress | AT4G12020 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K). This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9), At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G12020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9SZ67 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G12020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049638 | 0.0 | AL049638.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project). | |||
GenBank | AL161533 | 0.0 | AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118968.1 | 0.0 | protein kinase family protein | ||||
Swissprot | Q9SZ67 | 0.0 | WRK19_ARATH; Probable WRKY transcription factor 19 | ||||
TrEMBL | A0A1P8B8D3 | 0.0 | A0A1P8B8D3_ARATH; Protein kinase family protein | ||||
STRING | AT4G12020.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8003 | 4 | 6 |
Link Out ? help Back to Top | |
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Phytozome | AT4G12020.2 |
Entrez Gene | 826810 |
iHOP | AT4G12020 |
wikigenes | AT4G12020 |