PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298227.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 670aa MW: 77473.3 Da PI: 8.0588

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.3e-21	63	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+++++ +++++w+v ++ leHnH l XP_021298227.1 63 NYYNCYAKEAGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----RLRKETRTGCPAMIRMRVMDSKRWRVLEVTLEHNHLL 146 69**************************************99988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MEEEEASLSN DQLPEGKCNG EALKERDSGP IELDGQNGLP EGKKEFVAPA VGMEFESYDD 60 AYNYYNCYAK EAGFCVRVKN SWFKRNSREK YGAVLCCSSQ GFKRVKDVNR LRKETRTGCP 120 AMIRMRVMDS KRWRVLEVTL EHNHLLGAKI YKSIKKMGSG TKRKLQSSSD AEVRTIKLYR 180 ALVIDAGGNG NPNSNAREVR NFSEHPNQLN LRKGDSQAIY NYLCRMQLTN PNFFYLMDLN 240 DEGHLRNVFW VDSHCRASCA YFGDVIYIDN TCLSNRYETP LVALVGINHH GQTVLMGCGL 300 LAGETSESYT WLFKAWLTCV SGQCPQTVIT DRCKALQNAI AEVFPKSNHR FSLSHIMKKG 360 PEKLGGLRNY DAIRKTFVKA VYETLKVIEF EAAWGFMVQR FGITDHEWLR SLYEDRARWA 420 PVYLKDIFFA GMSSSRPGEN VSPFFEKYVH KQTPVKEFLD KYELALQKKH KEETLADIES 480 RNSSPALRTR CSFELQLSKL YTREIFKKFQ FEVEEMYSCF STTQLHVDGP IIIFLVKERV 540 SDEGNRREIR DYEVLYNRTA SEVRCICSCF NFCGYLCRHA LCVLNFNGVE EIPPKYILSR 600 WKKDYKRLYV PDQGFNNVDV VDRIQWFNQL YRSALQVVEE GAISLDHYKV ALQAFEESLN 660 RVHEVEEKQE

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MEEEEASLSN DQLPEGKCNG EALKERDSGP IELDGQNGLP EGKKEFVAPA VGMEFESYDD  60
AYNYYNCYAK EAGFCVRVKN SWFKRNSREK YGAVLCCSSQ GFKRVKDVNR LRKETRTGCP  120
AMIRMRVMDS KRWRVLEVTL EHNHLLGAKI YKSIKKMGSG TKRKLQSSSD AEVRTIKLYR  180
ALVIDAGGNG NPNSNAREVR NFSEHPNQLN LRKGDSQAIY NYLCRMQLTN PNFFYLMDLN  240
DEGHLRNVFW VDSHCRASCA YFGDVIYIDN TCLSNRYETP LVALVGINHH GQTVLMGCGL  300
LAGETSESYT WLFKAWLTCV SGQCPQTVIT DRCKALQNAI AEVFPKSNHR FSLSHIMKKG  360
PEKLGGLRNY DAIRKTFVKA VYETLKVIEF EAAWGFMVQR FGITDHEWLR SLYEDRARWA  420
PVYLKDIFFA GMSSSRPGEN VSPFFEKYVH KQTPVKEFLD KYELALQKKH KEETLADIES  480
RNSSPALRTR CSFELQLSKL YTREIFKKFQ FEVEEMYSCF STTQLHVDGP IIIFLVKERV  540
SDEGNRREIR DYEVLYNRTA SEVRCICSCF NFCGYLCRHA LCVLNFNGVE EIPPKYILSR  600
WKKDYKRLYV PDQGFNNVDV VDRIQWFNQL YRSALQVVEE GAISLDHYKV ALQAFEESLN  660
RVHEVEEKQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein