PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298174.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 849aa MW: 98930.2 Da PI: 9.1708

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	217	236	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_021298174.1 217 CPFHLKTGACRFGQRCSRVH 236 ******************99 PP
2	zf-CCCH	26.3	1.3e-08	346	373	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f+++ tC++G C+F+H+ XP_021298174.1 346 WKVAICGEFMKSRlkTCSHGTACNFIHC 373 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence
MGEAETVLKG EEGGGERENH QMEKSRKEKR KQMKKMKRKQ VRKEAAEKER EVEEARLNDP 60 EEQMRIQREE EEERKRREIA LKEFEERERA WVEAMEMKRK AQEEEEKEEE EKRKDLKEDA 120 NGEQEEMSDD WDYIEGSPEI IWEGNEITVR KKKVRVPKKD ANQKSKEEDA DRPTSNPLPP 180 QSEAFADYLN ASSAQQVLES VAKEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPD 240 KSCTLLMRNM YNGPGLAWEQ DEGLEYTDEE VERCYEEFYE DVHTEFLKFG EIVNFKVCKN 300 GAFHLRGNVY VHYKMLESAV LAYHSINGRY FAGKQVKCEF VNLTRWKVAI CGEFMKSRLK 360 TCSHGTACNF IHCFRNPGGD YEWADWDKPP PRYWVKKMGA LFGYTDEAGF EKQIAQEHSR 420 QSRNPSRMIK SDADRHCSRR SKSREMNRLT GGADGRPCNK DDVEESSRSQ RGKNNDKKQT 480 KSLDGRSYRE NQSLRWDQNS EKSHDTSSDG GYSDSKRGKK YDRKRTKTLD GRSDRQRSLK 540 WDQNSEEIHD TSSDGSYSDS KRGKKNDRKQ EKVLDGGRSD RQRSLKWDEN SEKIHDTSSD 600 GGYSDGKRGK KNDRKQAKTL DGRSDRQRSL KWDENSEKIH DTGSDGGYSD SRRGKKNDRK 660 RAKGLDEGRS HRQRRLTWDQ NSEEIHDNSS DGGYSDSKRG KKSDRKRAKT LDGRSGRRRS 720 LKWDENSEKI HDTGSDGGYS DSKRGKKNDR XKILDGRSDR DRNLKWDQNR ERTLDTSSDE 780 GYSGRDIDAA RDTDEVRHRC HAKKHSKHQS GSLEYLADNR NFKNRDHEDT ENSPAQTKKR 840 TRHRSSKGG

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence

MGEAETVLKG EEGGGERENH QMEKSRKEKR KQMKKMKRKQ VRKEAAEKER EVEEARLNDP  60
EEQMRIQREE EEERKRREIA LKEFEERERA WVEAMEMKRK AQEEEEKEEE EKRKDLKEDA  120
NGEQEEMSDD WDYIEGSPEI IWEGNEITVR KKKVRVPKKD ANQKSKEEDA DRPTSNPLPP  180
QSEAFADYLN ASSAQQVLES VAKEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPD  240
KSCTLLMRNM YNGPGLAWEQ DEGLEYTDEE VERCYEEFYE DVHTEFLKFG EIVNFKVCKN  300
GAFHLRGNVY VHYKMLESAV LAYHSINGRY FAGKQVKCEF VNLTRWKVAI CGEFMKSRLK  360
TCSHGTACNF IHCFRNPGGD YEWADWDKPP PRYWVKKMGA LFGYTDEAGF EKQIAQEHSR  420
QSRNPSRMIK SDADRHCSRR SKSREMNRLT GGADGRPCNK DDVEESSRSQ RGKNNDKKQT  480
KSLDGRSYRE NQSLRWDQNS EKSHDTSSDG GYSDSKRGKK YDRKRTKTLD GRSDRQRSLK  540
WDQNSEEIHD TSSDGSYSDS KRGKKNDRKQ EKVLDGGRSD RQRSLKWDEN SEKIHDTSSD  600
GGYSDGKRGK KNDRKQAKTL DGRSDRQRSL KWDENSEKIH DTGSDGGYSD SRRGKKNDRK  660
RAKGLDEGRS HRQRRLTWDQ NSEEIHDNSS DGGYSDSKRG KKSDRKRAKT LDGRSGRRRS  720
LKWDENSEKI HDTGSDGGYS DSKRGKKNDR XKILDGRSDR DRNLKWDQNR ERTLDTSSDE  780
GYSGRDIDAA RDTDEVRHRC HAKKHSKHQS GSLEYLADNR NFKNRDHEDT ENSPAQTKKR  840
TRHRSSKGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	ERKRRE
2	74	100	RKRREIALKEFEERERAWVEAMEMKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-157	C3H family protein