PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297827.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family E2F/DP
Protein Properties Length: 351aa    MW: 39784.1 Da    PI: 9.5301
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.55.2e-241984171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rkeksL+ll+++fl+l+++ + +++ l+++a++L    v  +rRRiYD++N+Le+++++++k kn+++wkg
  XP_021297827.1 19 RKEKSLGLLCSNFLELYNHDSIQTIGLDDAASKL---GV--ERRRIYDVVNILESIGVVARKGKNQYSWKG 84
                    79*****************999************...**..****************************98 PP
2E2F_TDP77.11.7e-24128207271
         E2F_TDP   2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     +eksL+l+tq+f+kl+ +s+++i+tl+++a +L+ +      +++k+RR+YDi+NV++++nliek     ++k+++rw g
  XP_021297827.1 128 REKSLWLITQNFVKLFLCSDAEIITLDSAAVALLGDvhnstAMRTKVRRLYDIANVFSSMNLIEKthhpeSRKPAFRWLG 207
                     79***************************************************************9999999******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MSSFLSRESE PDSRTFYCRK EKSLGLLCSN FLELYNHDSI QTIGLDDAAS KLGVERRRIY  60
DVVNILESIG VVARKGKNQY SWKGFGEIPR ALEKLKVLDE NESGGSFNVK IDGQDNSSES  120
SKHIDTKREK SLWLITQNFV KLFLCSDAEI ITLDSAAVAL LGDVHNSTAM RTKVRRLYDI  180
ANVFSSMNLI EKTHHPESRK PAFRWLGWGA KLHNGSTTAL ALNESKKRMF GTEIANHSLK  240
RMKANTSVHR KLNQKENMAM HIKHECVEKD NKMEQHLKQS SRGFVFGPFT PGGMPTGNKN  300
ERPVGDWESL ASTYKPHYLN QALSDLFAHY MEAWKSWYAE VAGRGETHLS P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-109E2F/DP family protein