PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G01330.1 | ||||||||
Common Name | DEL3, E2FF, E2L2, ELP1, T22N4.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 354aa MW: 39999.2 Da PI: 8.9668 | ||||||||
Description | DP-E2F-like protein 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 70.7 | 1.7e-22 | 21 | 86 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL++l ++fl+l+++ + + + l+++a +L v +rRRiYD++N+Le++++++++ kn+++wkg AT3G01330.1 21 RKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQL---GV--ERRRIYDVVNILESIGIVARRGKNQYSWKG 86 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 83.2 | 2.2e-26 | 145 | 225 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 +keksL+ll+q+f+k++ +s+++ +tl+++ak+L+s+ ++++k+RR+YDi+NV+ ++nliek ++k+++rw g AT3G01330.1 145 KKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDspdsvHMRTKVRRLYDIANVFASMNLIEKthipvTRKPAYRWLG 225 69*****************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-23 | 19 | 87 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.21E-15 | 20 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.3E-26 | 21 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-18 | 22 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.3E-22 | 141 | 227 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.4E-30 | 145 | 225 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.7E-19 | 146 | 225 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.73E-13 | 147 | 226 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MSSAIVVSQD AESLGLQIYS RKEKSLGVLV SNFLRLYNRD DVDLIGLDDA AGQLGVERRR 60 IYDVVNILES IGIVARRGKN QYSWKGFGEI PRSLDELKEE GMRERLGYSS SNNSDKVSNG 120 CEREEPLTLT PDDQENSSSS KMDQKKEKSL WLLAQNFVKM FLCSDDDLIT LDSAAKALLS 180 DSPDSVHMRT KVRRLYDIAN VFASMNLIEK THIPVTRKPA YRWLGSKSIA ERGLSLFNSG 240 EPKRVFGTEI TNLRAKRNKT YCSSIRKQIG YKKHDEENTE QESKPAASKY VFGPFSPIGA 300 SKTNNDKVGK GRLLEIEALA STYQPQYCNQ EITGLLGHFT EAWKKWYAEV DRNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 7e-33 | 20 | 213 | 3 | 224 | Transcription factor E2F8 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186509656 | 0.0 | ||||
Genevisible | 257524_at | 0.0 | ||||
Expression Atlas | AT3G01330 | - | ||||
AtGenExpress | AT3G01330 | - | ||||
ATTED-II | AT3G01330 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in mid-S phase. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:15308755}. | |||||
Uniprot | TISSUE SPECIFICITY: High expression in young cotyledons and leaves, hypocotyls, shoot apical meristem, roots and mature pollen grains, moderate in developing trichomes, flowers and at early stages of developing anthers, and barely detectable in mature leaves. Not detected in primary root meristem, emerging lateral roots, pistils, developing embryos and siliques. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G01330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G01330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB074532 | 0.0 | AB074532.1 Arabidopsis thaliana mRNA for E2F-like repressor E2L2, complete cds. | |||
GenBank | AY093024 | 0.0 | AY093024.1 Arabidopsis thaliana unknown protein (At3g01330) mRNA, complete cds. | |||
GenBank | BT000412 | 0.0 | BT000412.1 Arabidopsis thaliana unknown protein (At3g01330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_186782.2 | 0.0 | DP-E2F-like protein 3 | ||||
Swissprot | Q8RWL0 | 0.0 | E2FF_ARATH; E2F transcription factor-like E2FF | ||||
TrEMBL | A0A178V7U8 | 0.0 | A0A178V7U8_ARATH; E2L2 | ||||
STRING | AT3G01330.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6003 | 25 | 47 | Representative plant | OGRP2474 | 16 | 34 |
Link Out ? help Back to Top | |
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Phytozome | AT3G01330.1 |
Entrez Gene | 821221 |
iHOP | AT3G01330 |
wikigenes | AT3G01330 |