PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297826.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 358aa MW: 40544.1 Da PI: 9.4075

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.5	5.4e-24	19	84	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+++fl+l+++ + +++ l+++a++L v +rRRiYD++N+Le+++++++k kn+++wkg XP_021297826.1 19 RKEKSLGLLCSNFLELYNHDSIQTIGLDDAASKL---GV--ERRRIYDVVNILESIGVVARKGKNQYSWKG 84 79***************999********.....****************************98 PP
2	E2F_TDP	77.1	1.7e-24	135	214	2	71
E2F_TDP 2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 +eksL+l+tq+f+kl+ +s+++i+tl+++a +L+ + +++k+RR+YDi+NV++++nliek ++k+++rw g XP_021297826.1 135 REKSLWLITQNFVKLFLCSDAEIITLDSAAVALLGDvhnstAMRTKVRRLYDIANVFSSMNLIEKthhpeSRKPAFRWLG 214 79*************************************************************9999999****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MSSFLSRESE PDSRTFYCRK EKSLGLLCSN FLELYNHDSI QTIGLDDAAS KLGVERRRIY 60 DVVNILESIG VVARKGKNQY SWKGFGEIPR ALEKLKVLDE NESGGSFNVK IDGQDNSSES 120 SKHIALLFVC LDTKREKSLW LITQNFVKLF LCSDAEIITL DSAAVALLGD VHNSTAMRTK 180 VRRLYDIANV FSSMNLIEKT HHPESRKPAF RWLGWGAKLH NGSTTALALN ESKKRMFGTE 240 IANHSLKRMK ANTSVHRKLN QKENMAMHIK HECVEKDNKM EQHLKQSSRG FVFGPFTPGG 300 MPTGNKNERP VGDWESLAST YKPHYLNQAL SDLFAHYMEA WKSWYAEVAG RGETHLSP

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MSSFLSRESE PDSRTFYCRK EKSLGLLCSN FLELYNHDSI QTIGLDDAAS KLGVERRRIY  60
DVVNILESIG VVARKGKNQY SWKGFGEIPR ALEKLKVLDE NESGGSFNVK IDGQDNSSES  120
SKHIALLFVC LDTKREKSLW LITQNFVKLF LCSDAEIITL DSAAVALLGD VHNSTAMRTK  180
VRRLYDIANV FSSMNLIEKT HHPESRKPAF RWLGWGAKLH NGSTTALALN ESKKRMFGTE  240
IANHSLKRMK ANTSVHRKLN QKENMAMHIK HECVEKDNKM EQHLKQSSRG FVFGPFTPGG  300
MPTGNKNERP VGDWESLAST YKPHYLNQAL SDLFAHYMEA WKSWYAEVAG RGETHLSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01330.1	1e-108	E2F/DP family protein