PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297824.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family E2F/DP
Protein Properties Length: 376aa    MW: 42627.5 Da    PI: 9.2481
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.45.8e-241984171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rkeksL+ll+++fl+l+++ + +++ l+++a++L    v  +rRRiYD++N+Le+++++++k kn+++wkg
  XP_021297824.1 19 RKEKSLGLLCSNFLELYNHDSIQTIGLDDAASKL---GV--ERRRIYDVVNILESIGVVARKGKNQYSWKG 84
                    79*****************999************...**..****************************98 PP
2E2F_TDP771.9e-24153232271
         E2F_TDP   2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     +eksL+l+tq+f+kl+ +s+++i+tl+++a +L+ +      +++k+RR+YDi+NV++++nliek     ++k+++rw g
  XP_021297824.1 153 REKSLWLITQNFVKLFLCSDAEIITLDSAAVALLGDvhnstAMRTKVRRLYDIANVFSSMNLIEKthhpeSRKPAFRWLG 232
                     79***************************************************************9999999******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MSSFLSRESE PDSRTFYCRK EKSLGLLCSN FLELYNHDSI QTIGLDDAAS KLGVERRRIY  60
DVVNILESIG VVARKGKNQY SWKGFGEIPR ALEKLKEEAL KENFYISGCN KSLRVLDENE  120
SGGSFNVKID GQDNSSESSK HIALLFVCLD TKREKSLWLI TQNFVKLFLC SDAEIITLDS  180
AAVALLGDVH NSTAMRTKVR RLYDIANVFS SMNLIEKTHH PESRKPAFRW LGWGAKLHNG  240
STTALALNES KKRMFGTEIA NHSLKRMKAN TSVHRKLNQK ENMAMHIKHE CVEKDNKMEQ  300
HLKQSSRGFV FGPFTPGGMP TGNKNERPVG DWESLASTYK PHYLNQALSD LFAHYMEAWK  360
SWYAEVAGRG ETHLSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-108E2F/DP family protein