PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297822.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 398aa MW: 45165.5 Da PI: 9.3638

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.3	6.3e-24	19	84	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+++fl+l+++ + +++ l+++a++L v +rRRiYD++N+Le+++++++k kn+++wkg XP_021297822.1 19 RKEKSLGLLCSNFLELYNHDSIQTIGLDDAASKL---GV--ERRRIYDVVNILESIGVVARKGKNQYSWKG 84 79***************999********.....****************************98 PP
2	E2F_TDP	52	1.2e-16	189	254	16	71
E2F_TDP 16 llekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 l++ +++i+tl+++a +L+ + +++k+RR+YDi+NV++++nliek ++k+++rw g XP_021297822.1 189 LISFLQAEIITLDSAAVALLGDvhnstAMRTKVRRLYDIANVFSSMNLIEKthhpeSRKPAFRWLG 254 34445789*****************************************9999999****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSSFLSRESE PDSRTFYCRK EKSLGLLCSN FLELYNHDSI QTIGLDDAAS KLGVERRRIY 60 DVVNILESIG VVARKGKNQY SWKGFGEIPR ALEKLKEEAL KENFYISGCN KSLRVLDENE 120 SGGSFNVKID GQDNSSESSK HIDTKREKSL WLITQNFVKL FLCSDVRKLL FNVGLLFMNC 180 LLALSGEYLI SFLQAEIITL DSAAVALLGD VHNSTAMRTK VRRLYDIANV FSSMNLIEKT 240 HHPESRKPAF RWLGWGAKLH NGSTTALALN ESKKRMFGTE IANHSLKRMK ANTSVHRKLN 300 QKENMAMHIK HECVEKDNKM EQHLKQSSRG FVFGPFTPGG MPTGNKNERP VGDWESLAST 360 YKPHYLNQAL SDLFAHYMEA WKSWYAEVAG RGETHLSP

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSSFLSRESE PDSRTFYCRK EKSLGLLCSN FLELYNHDSI QTIGLDDAAS KLGVERRRIY  60
DVVNILESIG VVARKGKNQY SWKGFGEIPR ALEKLKEEAL KENFYISGCN KSLRVLDENE  120
SGGSFNVKID GQDNSSESSK HIDTKREKSL WLITQNFVKL FLCSDVRKLL FNVGLLFMNC  180
LLALSGEYLI SFLQAEIITL DSAAVALLGD VHNSTAMRTK VRRLYDIANV FSSMNLIEKT  240
HHPESRKPAF RWLGWGAKLH NGSTTALALN ESKKRMFGTE IANHSLKRMK ANTSVHRKLN  300
QKENMAMHIK HECVEKDNKM EQHLKQSSRG FVFGPFTPGG MPTGNKNERP VGDWESLAST  360
YKPHYLNQAL SDLFAHYMEA WKSWYAEVAG RGETHLSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01330.1	1e-103	E2F/DP family protein