PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296645.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-YC

Protein Properties

Length: 297aa MW: 32525 Da PI: 5.1805

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.1	2.3e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl div r XP_021296645.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSSLHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDAGAD DRTISKRRKA AGDEGNDSDE 120 ESKRSRMHDV GHVGTSGRGR GRGRGRGRGR GARNVERDSH RELEPEPCPT LQHCNKSLST 180 PGMVIDDGSE SKELMKESTI GEDANQAVRN FDLNAEVDEN VDTKASAGAS TAAATTAAAT 240 AVAAAQPSSA EPTTETKHEE YPGWSLSEMD KMAIDPLQLA QLGRRLDEDE EDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RGRGRGRGRG
2	138	148	RGRGRGRGRGR
3	140	149	RGRGRGRGRG
4	140	150	RGRGRGRGRGR
5	142	151	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-78	NF-YC family protein