PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296632.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 362aa MW: 39277.2 Da PI: 7.4753

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.6e-10	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_021296632.1 91 FKTKLCCKFRA-GTCPYVTNCNFAHS 115 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_021296632.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP
3	zf-CCCH	43	7.6e-14	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_021296632.1 242 WKTRICNKWELTGYCPFGNKCHFAHG 267 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDYGRENVVH VIPTNGPESW VPNSADPSVW ATEEDYRVWN NQETSTDTPS NSSYDQRQPQ 60 SRSNSEQPPN KKSRNSQELN SRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR 120 RPPPNWQEIV AAHEEEKGIL SEPREEFQIP SLGSSSFSGE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGSGGGGG GGGGGGAAAA PGNGSNSKPS 240 NWKTRICNKW ELTGYCPFGN KCHFAHGVAE LHRYGGGLVE AEAKDPSATP PDPKQGGVPS 300 KTPADTVAAS APTVPLSDVY HLGVPSQRTS LVIQRPGQRT HQKWKGPDKI SRIYGDWIDD 360 IE

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDYGRENVVH VIPTNGPESW VPNSADPSVW ATEEDYRVWN NQETSTDTPS NSSYDQRQPQ  60
SRSNSEQPPN KKSRNSQELN SRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKGIL SEPREEFQIP SLGSSSFSGE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGSGGGGG GGGGGGAAAA PGNGSNSKPS  240
NWKTRICNKW ELTGYCPFGN KCHFAHGVAE LHRYGGGLVE AEAKDPSATP PDPKQGGVPS  300
KTPADTVAAS APTVPLSDVY HLGVPSQRTS LVIQRPGQRT HQKWKGPDKI SRIYGDWIDD  360
IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-138	C3H family protein