PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295294.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family YABBY
Protein Properties Length: 211aa    MW: 23463.6 Da    PI: 7.6113
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.71.7e-71101752170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesas 93 
                     d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      a + hl +s+  +   llee  + ++n+  n+++++   
  XP_021295294.1  10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLAHSFFSPshnLLEEISNPSQNFLLNQTNTNDFA 104
                     577899****************************************9999999999999999999987734455666666666655555444333 PP

           YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             ++   +e+pr+p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  XP_021295294.1 105 LP------TRGAADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 175
                     22......3557899***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MSSSSTLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG  60
LLLPSANQFH LAHSFFSPSH NLLEEISNPS QNFLLNQTNT NDFALPTRGA ADELPRPPVI  120
NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLMPDQT  180
PKKTNVHQQE GEDVLIKDGF FASANVGVSP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-87YABBY family protein